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SRR1747065_scaffold_312_prodigal-single.1__X__X__00030
Bact-VirSRR1747065_scaffold_312_prodigal-single.1__X__X__00030
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-135
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 40.0 | 4.49e-01 | 85.7% | 76.7% |
| 2x5fA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.65 | 38.0 | 4.23e-01 | 87.2% | 72.1% |
| 3dydA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 44.0 | 4.38e-01 | 91.7% | 68.6% |
| 4ix8A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 43.0 | 4.23e-01 | 91.0% | 67.1% |
| 4ympA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 34.0 | 3.75e-01 | 80.5% | 66.1% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 32.0 | 4.02e-01 | 77.4% | 88.0% |
| 2amyA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.60 | 42.0 | 4.66e-01 | 85.7% | 92.2% |
| 2r4fA02 | 3.90.770.10 | Alpha Beta › Alpha-Beta Complex › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 › 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2 | 0.60 | 44.0 | 3.84e-01 | 77.4% | 63.1% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 4.28e-01 | 84.2% | 80.4% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 42.0 | 3.38e-01 | 74.4% | 87.0% |
| 2e1bA02 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.58 | 48.0 | 4.89e-01 | 87.2% | 95.3% |
| 1v72A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 32.0 | 3.64e-01 | 89.5% | 72.3% |
| 6toaF01 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.55 | 43.0 | 4.37e-01 | 83.5% | 95.4% |
| 2yrrA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 36.0 | 3.87e-01 | 97.0% | 78.4% |
| 2gu3A02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 28.0 | 3.73e-01 | 76.7% | 100.0% |
| 2zovA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.54 | 43.0 | 4.05e-01 | 85.7% | 88.6% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 28.0 | 3.63e-01 | 78.9% | 91.5% |
| 4cvqA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 43.0 | 4.00e-01 | 99.2% | 69.1% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 40.0 | 4.35e-01 | 79.7% | 96.3% |
| 3lpxB02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 35.0 | 4.08e-01 | 82.7% | 95.7% |
| 2pfcA00 | 3.10.129.30 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Rv0098, thioesterase-like hot dog domain | 0.53 | 40.0 | 3.78e-01 | 78.9% | 92.5% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.51 | 30.0 | 3.68e-01 | 99.2% | 92.9% |
| 4lw2A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 38.0 | 3.80e-01 | 95.5% | 78.2% |
| 2hg2A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.50 | 45.0 | 3.56e-01 | 100.0% | 82.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3636970 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.69 | 38.0 | 4.12e-01 | 70.7% | 63.6% |
| 4978826 | 873.1.1.18 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HTH_24 | 0.69 | 45.0 | 3.81e-01 | 83.5% | 39.7% |
| 3627004 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.69 | 38.0 | 4.39e-01 | 70.7% | 72.0% |
| 3550813 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.67 | 36.0 | 4.25e-01 | 70.7% | 73.7% |
| 4985379 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.67 | 44.0 | 4.47e-01 | 82.7% | 66.4% |
| 3262729 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.66 | 37.0 | 4.25e-01 | 70.7% | 74.7% |
| 1151817 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.65 | 38.0 | 4.29e-01 | 87.2% | 74.3% |
| 4975543 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.64 | 39.0 | 4.35e-01 | 87.2% | 76.2% |
| 2075912 | 3012.1.1.2 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PMM | 0.64 | 44.0 | 4.96e-01 | 85.7% | 94.0% |
| 5069807 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.62 | 44.0 | 4.03e-01 | 83.5% | 55.4% |
| 4928954 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.62 | 41.0 | 4.20e-01 | 79.7% | 68.5% |
| 1140900 | 809.2.1.0 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like | 0.62 | 27.0 | 3.69e-01 | 79.7% | 84.7% |
| 4978793 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.62 | 42.0 | 3.91e-01 | 82.0% | 55.2% |
| 1866823 | 11.1.1.72 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NEAT | 0.61 | 34.0 | 3.75e-01 | 80.5% | 66.1% |
| 224331 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.60 | 37.0 | 3.96e-01 | 87.2% | 71.7% |
| 4560756 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.59 | 41.0 | 4.14e-01 | 97.0% | 70.7% |
| 4928823 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 34.0 | 3.60e-01 | 82.7% | 60.8% |
| 5012120 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.59 | 35.0 | 3.66e-01 | 79.7% | 63.3% |
| 5025413 | 3016.1.1.1 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 | 0.59 | 41.0 | 4.36e-01 | 97.0% | 80.0% |
| 3973054 | 301.3.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like | 0.57 | 45.0 | 4.17e-01 | 85.7% | 88.6% |
| 3285693 | 222.1.1.7 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FcoT | 0.56 | 42.0 | 3.89e-01 | 79.7% | 88.4% |
| 4943199 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 40.0 | 4.13e-01 | 97.0% | 78.4% |
| 3572630 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.55 | 40.0 | 3.17e-01 | 75.9% | 86.0% |
| 4991900 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 43.0 | 3.16e-01 | 86.5% | 70.9% |
| 4941675 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.53 | 43.0 | 2.93e-01 | 86.5% | 75.3% |
| 5045707 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.52 | 29.0 | 3.70e-01 | 77.4% | 96.0% |
| 5063650 | 3518.1.1.1 ↗ | a+b two layers › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › putative RnfG subunit of electron transport complex › FMN_bind | 0.51 | 37.0 | 3.52e-01 | 75.9% | 92.1% |
| 3807714 | 2002.1.1.219 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Raffinose_syn | 0.51 | 35.0 | 4.12e-01 | 84.2% | 100.0% |
| 4500379 | 7524.1.1.1 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh | 0.51 | 45.0 | 3.70e-01 | 100.0% | 92.9% |
| 3432757 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.50 | 39.0 | 3.10e-01 | 82.0% | 98.6% |