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SRR1747065_scaffold_312_prodigal-single.1__X__X__00046
Bact-VirSRR1747065_scaffold_312_prodigal-single.1__X__X__00046
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-90
Domain cluster:
rep: MT939242.1__QOI68884.1__phi9184_ORF065__00066__D5-76
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aqbA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.67 | 45.0 | 3.55e-01 | 70.1% | 77.1% |
| 1jkgB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.65 | 46.0 | 3.59e-01 | 72.4% | 36.1% |
| 4ckmB00 | 2.170.210.20 | Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain | 0.63 | 55.0 | 4.74e-01 | 100.0% | 91.7% |
| 3q90B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 40.0 | 3.51e-01 | 71.3% | 43.1% |
| 1qhlA00 | 3.40.1140.10 | Alpha Beta › 3-Layer(aba) Sandwich › N-terminal domain of mukB › | 0.62 | 48.0 | 3.65e-01 | 82.8% | 57.1% |
| 3jv1A00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.62 | 45.0 | 3.57e-01 | 83.9% | 36.8% |
| 3qc2B00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.61 | 53.0 | 3.56e-01 | 100.0% | 29.7% |
| 1eurA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.59 | 52.0 | 3.48e-01 | 100.0% | 32.7% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 43.0 | 3.70e-01 | 79.3% | 56.3% |
| 3h51A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 38.0 | 3.28e-01 | 71.3% | 42.3% |
| 2xu8A00 | 3.90.70.190 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Domain of unknown function (DUF5086) | 0.57 | 40.0 | 3.71e-01 | 82.8% | 56.0% |
| 1cbyA00 | 3.40.198.10 | Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like | 0.57 | 41.0 | 3.01e-01 | 74.7% | 92.1% |
| 1mdaH00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 51.0 | 3.36e-01 | 100.0% | 24.5% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.56 | 49.0 | 3.36e-01 | 100.0% | 30.9% |
| 4ffuB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 38.0 | 3.23e-01 | 70.1% | 89.3% |
| 4ffgA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.56 | 48.0 | 3.33e-01 | 100.0% | 38.3% |
| 2vsmA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.56 | 49.0 | 3.19e-01 | 100.0% | 28.1% |
| 3wewA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 47.0 | 3.58e-01 | 100.0% | 93.1% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 45.0 | 3.68e-01 | 90.8% | 66.3% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 35.0 | 2.96e-01 | 100.0% | 38.5% |
| 3h2gA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 46.0 | 3.30e-01 | 97.7% | 92.1% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 4.06e-01 | 88.5% | 91.7% |
| 1di2A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 37.0 | 4.00e-01 | 93.1% | 89.9% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.53 | 43.0 | 3.15e-01 | 89.7% | 33.2% |
| 1gyvA00 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.52 | 45.0 | 4.13e-01 | 100.0% | 90.8% |
| 4mbrA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 42.0 | 3.52e-01 | 94.3% | 88.6% |
| 4ibnA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 41.0 | 3.25e-01 | 88.5% | 86.7% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719107 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.68 | 50.0 | 3.11e-01 | 78.2% | 24.7% |
| 3289863 | 243.1.1.63 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6841 | 0.67 | 45.0 | 3.73e-01 | 74.7% | 40.7% |
| 5031081 | 243.3.1.59 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GvpO | 0.66 | 44.0 | 4.64e-01 | 75.9% | 76.2% |
| 3710606 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.66 | 45.0 | 3.85e-01 | 70.1% | 45.2% |
| 5030147 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 49.0 | 4.17e-01 | 97.7% | 49.0% |
| 4611713 | 243.3.1.59 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GvpO | 0.64 | 42.0 | 4.42e-01 | 71.3% | 73.8% |
| 4945010 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.63 | 56.0 | 3.76e-01 | 98.9% | 32.7% |
| 3627177 | 5.1.4.242 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N | 0.62 | 48.0 | 3.23e-01 | 100.0% | 20.9% |
| 3741071 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.62 | 41.0 | 3.47e-01 | 70.1% | 41.4% |
| 3278526 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 43.0 | 3.73e-01 | 75.9% | 46.7% |
| 3858795 | 130.1.1.34 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF4518 | 0.61 | 42.0 | 3.53e-01 | 71.3% | 44.0% |
| 4384069 | 243.1.1.91 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4518 | 0.61 | 42.0 | 3.51e-01 | 71.3% | 44.0% |
| 3621147 | 5.1.4.166 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_DCAF4 | 0.61 | 56.0 | 3.54e-01 | 100.0% | 23.5% |
| 3962269 | 2004.1.1.204 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 47.0 | 3.04e-01 | 87.4% | 33.7% |
| 3206195 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.59 | 42.0 | 2.93e-01 | 73.6% | 28.6% |
| 3562593 | 4026.1.1.1 ↗ | a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer | 0.59 | 49.0 | 4.00e-01 | 89.7% | 55.6% |
| 3315197 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.59 | 50.0 | 4.27e-01 | 94.3% | 84.1% |
| 3802472 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.59 | 52.0 | 3.60e-01 | 100.0% | 28.5% |
| 3452571 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 54.0 | 5.04e-01 | 100.0% | 98.1% |
| 3859609 | 243.1.1.40 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 | 0.59 | 41.0 | 3.22e-01 | 72.4% | 39.5% |
| 4014614 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.58 | 41.0 | 3.44e-01 | 73.6% | 52.7% |
| 3226049 | 11.10.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH | 0.58 | 49.0 | 4.19e-01 | 94.3% | 80.0% |
| 3487833 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 50.0 | 3.34e-01 | 100.0% | 27.9% |
| 5049047 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.57 | 46.0 | 4.11e-01 | 87.4% | 63.2% |
| 3497892 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 46.0 | 2.84e-01 | 87.4% | 50.4% |
| 3606641 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 50.0 | 4.69e-01 | 98.9% | 90.0% |
| 3606640 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 48.0 | 4.41e-01 | 93.1% | 83.6% |
| 3701010 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.56 | 50.0 | 3.42e-01 | 100.0% | 28.7% |
| 4208052 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.56 | 44.0 | 3.51e-01 | 86.2% | 83.9% |
| 4142302 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.55 | 47.0 | 3.18e-01 | 100.0% | 24.8% |
| 3062082 | 5.1.3.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › HN | 0.55 | 49.0 | 3.13e-01 | 100.0% | 24.2% |
| 4590245 | 9.1.1.12 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd | 0.54 | 46.0 | 3.81e-01 | 96.6% | 88.4% |
| 4015408 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 47.0 | 3.15e-01 | 100.0% | 50.7% |
| 3740970 | 5.1.4.249 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 | 0.53 | 46.0 | 3.05e-01 | 100.0% | 23.7% |
| 3296925 | 222.1.1.16 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl-ACP_TE_C | 0.51 | 35.0 | 3.08e-01 | 71.3% | 77.0% |
| 4065140 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.51 | 45.0 | 3.22e-01 | 100.0% | 38.2% |
| 3487450 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.51 | 42.0 | 3.63e-01 | 93.1% | 61.4% |
| 5079500 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.51 | 37.0 | 2.94e-01 | 75.9% | 52.8% |
| 3488905 | 11.1.1.430 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP-delta | 0.51 | 35.0 | 3.01e-01 | 100.0% | 43.4% |
| 3222012 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 3.89e-01 | 98.9% | 96.0% |