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SRR1747065_scaffold_312_prodigal-single.1__X__X__00089

Bact-Vir

SRR1747065_scaffold_312_prodigal-single.1__X__X__00089

Identity

Kingdom:
phage

Quality

78.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 321-430
PDB
Domain cluster: representative
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 37.0 4.06e-01 80.0% 66.3%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 44.0 4.82e-01 84.5% 83.1%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.65 48.0 4.65e-01 91.8% 69.7%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.64 44.0 5.06e-01 91.8% 98.7%
3d3aA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 43.0 4.08e-01 98.2% 57.5%
4f8lA00 2.60.40.3590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 43.0 4.07e-01 93.6% 56.5%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 39.0 4.33e-01 90.9% 78.2%
1rwhA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.63 38.0 3.80e-01 85.5% 57.0%
4e8dA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 43.0 4.02e-01 99.1% 56.5%
4b6zA01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 41.0 4.14e-01 83.6% 65.5%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.62 36.0 4.04e-01 80.9% 75.6%
4fgmA01 2.60.40.3650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 3.97e-01 100.0% 50.6%
4wz9A01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.61 48.0 3.82e-01 98.2% 42.5%
2osxA01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 37.0 3.92e-01 85.5% 66.7%
2oz4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.60e-01 86.4% 83.5%
3vmnA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 49.0 4.52e-01 86.4% 73.2%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.61 44.0 3.70e-01 96.4% 43.9%
5dzyB01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.60 45.0 4.66e-01 89.1% 86.0%
5nn3A05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.60 38.0 3.60e-01 80.9% 53.8%
4d6gA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.59 40.0 3.82e-01 94.5% 58.5%
1z5hA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.59 39.0 3.38e-01 98.2% 43.5%
4iknA02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.59 39.0 4.05e-01 95.5% 71.7%
3l4yA05 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 40.0 3.70e-01 84.5% 55.8%
2wmfA03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.58 36.0 3.49e-01 83.6% 54.0%
2f0cA02 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.58 40.0 4.15e-01 94.5% 76.0%
2cxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.10e-01 85.5% 82.8%
3wnkA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 44.0 4.24e-01 83.6% 71.2%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.57 46.0 4.45e-01 86.4% 75.4%
1kcvL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 44.0 4.50e-01 87.3% 86.4%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 50.0 5.14e-01 99.1% 100.0%
1opoA02 2.60.40.1780 Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein 0.57 36.0 3.75e-01 90.9% 68.0%
3ciaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.57 45.0 3.79e-01 99.1% 50.5%
4a37A01 2.60.40.3120 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 4.45e-01 84.5% 90.3%
7sz8A03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.56 40.0 4.27e-01 89.1% 86.5%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.55 36.0 3.49e-01 90.0% 59.0%
3amkA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 38.0 3.99e-01 84.5% 80.0%
7kbrC01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 36.0 3.39e-01 80.9% 54.5%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.54 41.0 3.76e-01 95.5% 59.6%
1t4wA00 2.60.40.720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 47.0 3.97e-01 100.0% 57.1%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.99e-01 96.4% 85.3%
7zscA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.53 38.0 3.05e-01 74.5% 70.6%
1r17A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 46.0 4.08e-01 96.4% 66.5%
1e5bA00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 4.25e-01 85.5% 98.9%
4b60A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 4.02e-01 96.4% 66.7%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 47.0 4.29e-01 99.1% 88.5%
1uf2C02 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.13e-01 98.2% 72.6%
5byvB01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 44.0 3.68e-01 96.4% 96.1%
2je8A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 46.0 3.83e-01 98.2% 82.8%
4ktpA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 43.0 3.38e-01 92.7% 45.2%
2zotC00 2.60.40.4060 Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain 0.51 44.0 4.09e-01 94.5% 85.0%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.51 36.0 2.80e-01 72.7% 41.5%
3itqA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.51 36.0 3.07e-01 72.7% 80.0%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.51 42.0 3.38e-01 88.2% 58.9%
3ghmA03 2.60.120.830 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.98e-01 97.3% 71.8%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.50 37.0 3.82e-01 96.4% 82.2%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 37.0 3.64e-01 97.3% 71.4%
1g9mG00 2.170.40.20 Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein 0.50 43.0 3.25e-01 100.0% 47.2%
3c4aA02 3.30.9.20 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.50 31.0 2.90e-01 70.0% 45.9%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 35.0 3.52e-01 93.6% 71.8%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029312 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.73 41.0 4.07e-01 82.7% 52.2%
3988298 12.6.1.11 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › YfhO 0.73 41.0 4.65e-01 83.6% 71.8%
4947722 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.73 42.0 4.67e-01 83.6% 72.9%
4929682 12.2.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain 0.72 49.0 5.04e-01 85.5% 72.4%
4932962 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 43.0 4.31e-01 85.5% 57.4%
3972396 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 39.0 4.56e-01 83.6% 75.6%
3669480 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.71 42.0 4.39e-01 85.5% 63.1%
3280299 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.71 41.0 4.74e-01 83.6% 78.8%
3673946 12.1.1.63 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Raffinose_syn 0.71 43.0 4.88e-01 82.7% 80.7%
5044775 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.69 48.0 4.93e-01 94.5% 75.2%
3924218 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 46.0 4.61e-01 93.6% 66.1%
4970099 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.68 51.0 5.06e-01 95.5% 74.8%
5048738 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 45.0 5.23e-01 94.5% 93.8%
3259436 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 44.0 4.97e-01 83.6% 85.9%
4816119 12.1.1.25 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Fucosidase_C 0.67 45.0 4.56e-01 91.8% 68.2%
4163669 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.67 42.0 4.01e-01 85.5% 53.1%
3744243 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 46.0 4.68e-01 100.0% 71.8%
3635518 11.1.1.962 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7077 0.65 44.0 4.36e-01 97.3% 64.2%
5054987 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 44.0 4.89e-01 93.6% 90.6%
4855483 4081.1.1.9 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M61_N 0.65 50.0 4.27e-01 99.1% 51.7%
4972663 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 47.0 4.84e-01 87.3% 80.0%
3203718 11.1.5.105 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF7077 0.64 44.0 4.23e-01 97.3% 61.6%
5076974 12.1.1.34 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro38C2 0.64 40.0 4.42e-01 90.9% 77.8%
3523306 11.1.1.312 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LIF-R_Ig-like 0.64 42.0 4.60e-01 86.4% 82.2%
1391053 10.32.1.73 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 0.63 43.0 3.83e-01 98.2% 48.1%
3715744 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.63 44.0 4.49e-01 95.5% 72.7%
5042004 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 46.0 4.46e-01 96.4% 68.0%
4393127 12.1.1.44 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_5_C 0.63 45.0 4.50e-01 97.3% 72.2%
3338010 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.63 41.0 4.79e-01 85.5% 97.3%
4960841 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.63 46.0 3.93e-01 99.1% 47.2%
4144471 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 43.0 3.64e-01 99.1% 42.2%
4972050 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.62 45.0 2.97e-01 85.5% 17.9%
3988897 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.62 43.0 3.59e-01 99.1% 41.1%
3714611 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.62 40.0 4.66e-01 94.5% 97.3%
1148147 11.1.1.266 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M23_N 0.62 36.0 4.06e-01 80.9% 76.5%
3705988 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.61 39.0 4.58e-01 92.7% 100.0%
3378988 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.61 44.0 4.41e-01 97.3% 74.5%
4393967 12.1.1.21 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.61 49.0 4.50e-01 86.4% 72.4%
3285404 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.61 45.0 4.51e-01 98.2% 76.4%
5037041 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.61 42.0 4.50e-01 90.0% 83.2%
4026939 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 45.0 4.47e-01 90.9% 74.8%
4991092 3370.1.1.0 beta sandwiches › Lactococcin 972 › Lactococcin 972 › Lactococcin 972 0.60 40.0 4.51e-01 86.4% 93.8%
3961820 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.60 42.0 4.25e-01 92.7% 72.7%
4214734 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.60 47.0 4.50e-01 97.3% 72.9%
4954927 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.60 44.0 3.97e-01 98.2% 55.5%
3955793 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.59 43.0 4.05e-01 98.2% 62.2%
3932168 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.59 46.0 4.05e-01 95.5% 54.7%
5043829 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.58 47.0 4.18e-01 97.3% 60.6%
3490607 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 4.58e-01 91.8% 92.3%
5037572 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.58 37.0 3.59e-01 93.6% 56.0%
3572437 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.58 49.0 4.41e-01 96.4% 66.5%
3877348 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.58 40.0 3.69e-01 83.6% 55.8%
4881031 4315.1.1.1 beta barrels › Coronavirus NSP8-like › Coronavirus NSP8-like › Coronavirus NSP8-like › CoV_NSP8 0.58 37.0 3.10e-01 90.9% 36.4%
1713377 12.1.1.21 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_66 0.57 46.0 4.44e-01 86.4% 74.8%
3618151 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.57 40.0 3.66e-01 84.5% 54.5%
3922225 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 38.0 3.60e-01 82.7% 55.6%
3887378 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.57 38.0 3.57e-01 82.7% 54.3%
3513205 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.57 41.0 4.04e-01 95.5% 70.4%
1868507 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.57 39.0 3.66e-01 85.5% 55.7%
3572172 4178.1.1.0 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.57 39.0 3.62e-01 83.6% 55.4%
5009314 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 46.0 4.68e-01 87.3% 87.3%
5056882 4081.1.1.12 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF2207 0.56 51.0 4.12e-01 98.2% 84.9%
5009953 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.56 46.0 3.76e-01 98.2% 48.3%
2581320 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.67e-01 94.5% 97.6%
4948545 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.55 44.0 3.70e-01 99.1% 50.0%
4129516 11.1.5.131 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF5462 0.55 47.0 4.39e-01 99.1% 74.6%
4326361 12.3.1.8 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N 0.55 47.0 3.52e-01 95.5% 40.0%
4238113 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.55 43.0 3.57e-01 99.1% 46.3%
3902625 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.58e-01 82.7% 100.0%
3893303 11.1.1.34 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reeler 0.54 47.0 4.44e-01 96.4% 85.9%
3281166 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.54 45.0 4.52e-01 97.3% 88.7%
5013684 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.53 48.0 4.35e-01 99.1% 92.0%
3495353 221.13.1.1 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain › DUF4140 0.53 47.0 4.40e-01 99.1% 82.9%
5059264 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 44.0 4.42e-01 90.0% 90.9%
3259286 4178.1.1.1 beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › DUF5110 0.53 36.0 3.35e-01 82.7% 55.1%
3289291 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 43.0 4.05e-01 88.2% 81.5%
3797038 10.32.1.88 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Glyco_hydro_2_N2 0.52 46.0 3.78e-01 99.1% 81.0%
1675270 2011.1.1.2 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14,Pepdidase_M14_N 0.51 42.0 2.94e-01 90.0% 72.9%
4026025 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.51 44.0 3.38e-01 95.5% 90.1%
3919493 10.32.1.234 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PGAP1_3rd 0.51 45.0 4.09e-01 96.4% 91.7%
4015853 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 3.82e-01 99.1% 85.9%
3899621 11.1.1.34 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Reeler 0.51 43.0 3.93e-01 94.5% 84.0%
4042790 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.50 43.0 3.20e-01 96.4% 89.1%
D2 medium residues 18-42_93-180_286-320
PDB
Domain cluster: representative
D3 medium residues 181-251
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2if1A00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.68 46.0 3.82e-01 87.3% 39.7%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 38.0 3.46e-01 70.4% 42.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 38.0 3.43e-01 71.8% 41.7%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.60 42.0 3.65e-01 74.6% 90.3%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 4.28e-01 81.7% 78.9%
1repC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.21e-01 87.3% 75.8%
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 42.0 4.12e-01 84.5% 73.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 3.56e-01 80.3% 48.2%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 41.0 2.98e-01 78.9% 79.0%
4ne4A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 44.0 3.50e-01 90.1% 71.3%
1i9gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 41.0 3.12e-01 78.9% 82.6%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.56 37.0 3.55e-01 83.1% 56.3%
5hl8C00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.55 38.0 3.68e-01 70.4% 87.3%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.55 40.0 3.71e-01 77.5% 100.0%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.51e-01 78.9% 59.2%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.53 36.0 2.89e-01 71.8% 78.9%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.53 39.0 3.66e-01 81.7% 70.5%
4mn5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 40.0 3.65e-01 84.5% 92.2%
1khmA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 39.0 3.67e-01 87.3% 62.9%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.42e-01 78.9% 53.3%
5tvfD00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.53 40.0 2.80e-01 84.5% 78.9%
4c2mA09 3.30.70.2850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 42.0 3.23e-01 90.1% 81.0%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 42.0 3.41e-01 88.7% 69.1%
2y8yA01 3.30.70.1200 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 1 0.52 41.0 3.98e-01 93.0% 98.8%
2jvzA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.52 38.0 3.72e-01 84.5% 71.2%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.72e-01 77.5% 78.4%
1q2lA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 43.0 3.07e-01 97.2% 77.1%
1vw4X00 2.20.28.120 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 0.51 33.0 3.50e-01 88.7% 73.4%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 42.0 3.07e-01 95.8% 86.6%
1lp9E02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.40e-01 91.5% 65.0%
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.50 38.0 3.33e-01 85.9% 59.0%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4026919 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.67 47.0 4.05e-01 87.3% 47.3%
3609340 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.64 45.0 4.10e-01 87.3% 54.7%
3604277 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.64 42.0 4.21e-01 88.7% 64.0%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 39.0 2.90e-01 70.4% 24.3%
3500307 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.62 42.0 3.66e-01 83.1% 44.3%
3632622 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.61 41.0 3.63e-01 88.7% 45.5%
2488229 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.59 40.0 3.97e-01 88.7% 66.2%
1175570 101.1.2.17 alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 3.89e-01 87.3% 54.8%
3883278 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.59 43.0 4.02e-01 81.7% 64.2%
3574282 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.58 42.0 3.73e-01 81.7% 50.9%
3318771 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.58 41.0 3.81e-01 83.1% 58.9%
3497072 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 41.0 3.62e-01 83.1% 48.2%
3036035 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.57 44.0 3.97e-01 87.3% 65.7%
3817652 387.1.5.15 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SLR1-BP 0.57 40.0 4.41e-01 91.5% 98.2%
4248927 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.57 46.0 3.89e-01 91.5% 83.2%
3686581 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 42.0 4.14e-01 84.5% 76.0%
3985754 101.1.2.187 alpha arrays › HTH › HTH › winged helix domain › Rep3_C 0.56 43.0 3.96e-01 87.3% 67.0%
3960152 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.56 45.0 3.69e-01 91.5% 47.4%
3677688 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 44.0 3.48e-01 88.7% 49.3%
3555254 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 40.0 3.86e-01 87.3% 68.8%
3380460 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.55 40.0 3.55e-01 85.9% 53.3%
3545806 509.1.1.15 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › SGT1 0.55 44.0 3.36e-01 94.4% 54.2%
3317376 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.54 40.0 3.54e-01 87.3% 51.8%
3540722 304.44.1.5 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 › JAG1 0.54 44.0 3.80e-01 90.1% 60.9%
5058454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 39.0 3.80e-01 80.3% 69.4%
3167816 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.75e-01 80.3% 67.8%
4086239 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 35.0 3.88e-01 90.1% 85.5%
3937237 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.54 45.0 3.41e-01 91.5% 84.2%
3895696 304.151.1.5 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › Ferredoxin-like domain of receptor-type protein tyrosine phosphatase › JAG1 0.54 43.0 3.73e-01 87.3% 66.4%
3734348 4955.1.1.1 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_7 0.54 41.0 3.34e-01 87.3% 43.7%
4027654 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 37.0 3.73e-01 84.5% 70.7%
3823393 320.1.1.3 a+b two layers › R3H domain-like › R3H domain › R3H domain › YlmH_1st 0.53 34.0 3.40e-01 78.9% 61.3%
3814809 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 40.0 3.52e-01 90.1% 53.6%
3980773 225.1.1.3 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 37.0 2.97e-01 74.6% 90.3%
3784212 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.49e-01 80.3% 57.1%
3630527 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 34.0 3.55e-01 90.1% 72.3%
5079724 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.41e-01 83.1% 53.3%
3296288 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 40.0 3.54e-01 85.9% 54.5%
3858557 304.159.1.4 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › JAG1 0.52 41.0 3.61e-01 90.1% 64.3%
3517855 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.52 37.0 3.69e-01 83.1% 72.0%
3549847 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.52 38.0 2.49e-01 80.3% 46.1%
5075560 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 39.0 3.09e-01 81.7% 40.0%
4971494 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.17e-01 81.7% 46.1%
3362546 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 39.0 3.63e-01 91.5% 63.2%
4025821 309.1.1.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase 0.51 42.0 3.03e-01 97.2% 81.6%
1949981 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.50e-01 88.7% 73.4%
3604769 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.51 38.0 3.09e-01 80.3% 45.9%
3364798 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 43.0 4.01e-01 100.0% 100.0%
3324140 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.51 39.0 3.52e-01 90.1% 60.0%
4981949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.42e-01 76.1% 65.0%
4403519 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 2.79e-01 80.3% 31.8%
3481547 101.1.2.68 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc34 0.51 37.0 3.06e-01 83.1% 44.7%