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SRR1747065_scaffold_38_prodigal-single.1__X__X__00073

Bact-Vir

SRR1747065_scaffold_38_prodigal-single.1__X__X__00073

Identity

Kingdom:
phage

Quality

76.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-110
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fi7A01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.73 65.0 6.05e-01 94.4% 97.7%
4qdnA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.70 58.0 5.67e-01 89.8% 99.2%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.63 39.0 4.33e-01 72.2% 77.6%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 39.0 4.32e-01 72.2% 78.2%
3ct5A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 53.0 4.72e-01 95.4% 93.7%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.58 33.0 3.55e-01 73.1% 65.6%
3qwlA02 1.10.8.680 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 0.57 37.0 4.15e-01 90.7% 89.6%
1rfzA00 1.10.3760.10 Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like 0.57 41.0 3.59e-01 75.0% 90.2%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 40.0 4.16e-01 76.9% 92.9%
1f5qB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 41.0 4.14e-01 79.6% 94.5%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 38.0 3.10e-01 97.2% 39.9%
1wvuA01 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 45.0 4.10e-01 100.0% 86.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1253692 235.1.1.23 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme2 0.63 54.0 4.72e-01 94.4% 92.0%
3581101 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.55 48.0 4.17e-01 98.1% 97.6%
3597328 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 36.0 3.89e-01 76.9% 83.3%
4328605 2003.1.5.25 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GidB 0.53 41.0 3.20e-01 84.3% 52.0%
None 0.51 43.0 3.18e-01 92.6% 78.3%
3434424 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.51 30.0 2.97e-01 100.0% 53.0%
3721858 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.51 36.0 2.82e-01 75.9% 36.0%
4410099 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.50 36.0 3.31e-01 74.1% 70.0%
D2 medium residues 118-174
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gzkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 56.0 5.00e-01 86.0% 69.6%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 56.0 4.65e-01 87.7% 69.4%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 52.0 4.39e-01 82.5% 90.8%
4zzfA02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 55.0 4.64e-01 87.7% 81.2%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.68 53.0 4.94e-01 86.0% 79.2%
3c12A02 2.60.40.4070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 55.0 4.75e-01 87.7% 81.6%
4cj0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 54.0 4.53e-01 86.0% 63.2%
3r4rA01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 59.0 4.35e-01 98.2% 86.6%
2yocA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 57.0 4.63e-01 96.5% 71.3%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 56.0 4.66e-01 94.7% 67.3%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 53.0 4.58e-01 87.7% 68.5%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.66 53.0 4.11e-01 87.7% 81.7%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 56.0 4.64e-01 94.7% 67.3%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 4.59e-01 93.0% 81.8%
5jtwA02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 55.0 4.63e-01 94.7% 66.0%
5hccB02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.66 55.0 4.71e-01 94.7% 70.5%
3rbgD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 51.0 4.18e-01 84.2% 68.0%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 55.0 4.55e-01 93.0% 95.2%
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 49.0 4.79e-01 78.9% 80.6%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.65 51.0 4.36e-01 86.0% 89.2%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 52.0 4.90e-01 89.5% 73.2%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.65 48.0 4.65e-01 80.7% 78.8%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 55.0 4.65e-01 94.7% 94.7%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 53.0 4.45e-01 93.0% 91.2%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.26e-01 91.2% 73.4%
6u7iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 54.0 4.62e-01 94.7% 91.3%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 53.0 4.59e-01 94.7% 81.1%
1z9mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.28e-01 91.2% 89.4%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 44.0 3.51e-01 71.9% 96.2%
4g5aA00 2.60.40.3080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 51.0 4.36e-01 93.0% 80.8%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.63 53.0 3.92e-01 94.7% 78.1%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.63 53.0 3.98e-01 94.7% 76.9%
3kptA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 51.0 4.29e-01 94.7% 83.0%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 52.0 4.32e-01 93.0% 70.3%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 53.0 4.47e-01 94.7% 95.8%
3nqhA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 53.0 3.99e-01 93.0% 81.6%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 53.0 4.17e-01 94.7% 95.8%
5d1oA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.62 48.0 4.54e-01 89.5% 86.3%
6ecaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 53.0 4.48e-01 94.7% 95.8%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 51.0 3.88e-01 93.0% 45.4%
1g71A01 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.62 50.0 3.44e-01 96.5% 78.8%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 4.13e-01 96.5% 84.3%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 52.0 4.26e-01 93.0% 67.3%
3isyA00 2.60.40.2360 Mainly Beta › Sandwich › Immunoglobulin-like › Intracellular proteinase inhibitor BsuPI 0.61 52.0 4.11e-01 94.7% 94.9%
1v6eA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 45.0 4.07e-01 80.7% 58.7%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.11e-01 94.7% 96.4%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 48.0 4.06e-01 93.0% 86.5%
4jgpA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 42.0 3.51e-01 73.7% 100.0%
3zghA00 2.60.40.3400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 49.0 3.52e-01 94.7% 53.7%
4dt4A01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 40.0 3.64e-01 70.2% 92.4%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.59 48.0 3.98e-01 89.5% 57.8%
1vs0A01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.59 44.0 4.11e-01 84.2% 76.3%
1ix5A00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 43.0 3.24e-01 80.7% 96.7%
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 43.0 3.79e-01 80.7% 52.2%
4lrzE01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 45.0 3.13e-01 84.2% 63.5%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.57 46.0 3.55e-01 93.0% 58.9%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.54 43.0 2.92e-01 91.2% 79.8%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 41.0 3.05e-01 80.7% 67.4%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.54 41.0 3.19e-01 82.5% 80.8%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.53 37.0 3.54e-01 73.7% 97.0%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 36.0 3.10e-01 71.9% 81.1%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 37.0 3.14e-01 77.2% 64.5%
2kfwA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 38.0 3.15e-01 80.7% 74.3%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 40.0 3.11e-01 82.5% 79.8%
4nkpA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.51 41.0 3.15e-01 84.2% 82.3%
2tbvA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 2.66e-01 91.2% 85.7%
2wb7A02 2.60.40.2050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.08e-01 94.7% 67.1%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 38.0 3.06e-01 82.5% 82.9%
5ck3C00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 37.0 3.01e-01 77.2% 63.8%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4384880 101.1.14.3 alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.73 49.0 4.30e-01 70.2% 65.9%
4946799 101.1.11.0 alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 50.0 3.97e-01 71.9% 37.3%
5020151 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.71 57.0 4.31e-01 87.7% 74.8%
4574360 11.1.1.540 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Peptidase_M66 0.71 59.0 4.59e-01 91.2% 63.3%
4105434 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.70 54.0 4.00e-01 86.0% 64.9%
4582228 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 57.0 4.26e-01 91.2% 62.1%
4614122 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.69 55.0 3.93e-01 87.7% 59.4%
140020 11.1.1.48 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.68 55.0 4.60e-01 87.7% 64.3%
4476840 11.1.1.156 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › bMG3 0.68 58.0 4.89e-01 94.7% 60.0%
3884093 10.41.1.0 beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain 0.68 51.0 4.27e-01 82.5% 95.0%
4956412 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 53.0 4.84e-01 86.0% 66.7%
3797738 3570.1.1.1 a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI 0.66 51.0 3.77e-01 86.0% 57.0%
3927867 11.1.4.70 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_1st 0.66 55.0 4.75e-01 93.0% 86.7%
3927861 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.66 56.0 4.86e-01 93.0% 84.7%
3577095 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 53.0 4.56e-01 91.2% 70.5%
5081345 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.66 54.0 4.90e-01 91.2% 72.2%
3950412 11.1.4.130 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.66 55.0 5.02e-01 93.0% 88.0%
5040223 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 56.0 4.63e-01 94.7% 84.0%
3525981 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.65 55.0 4.60e-01 94.7% 66.0%
3216927 11.1.1.905 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.65 56.0 4.43e-01 94.7% 88.7%
4928801 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 55.0 4.43e-01 94.7% 83.6%
3502357 11.1.1.905 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ILCR1 0.65 54.0 4.31e-01 94.7% 96.7%
4937647 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 54.0 4.57e-01 93.0% 97.9%
4969829 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 53.0 4.50e-01 91.2% 93.7%
3913084 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.64 52.0 4.49e-01 89.5% 70.0%
5021316 11.1.1.184 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Wzt_C 0.64 55.0 4.01e-01 94.7% 76.1%
4959360 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 54.0 4.45e-01 94.7% 93.3%
4944290 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.64 54.0 4.75e-01 98.2% 75.6%
None 0.63 53.0 4.38e-01 94.7% 95.2%
5068037 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.63 49.0 3.86e-01 86.0% 74.2%
4927800 3156.1.1.0 beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related 0.63 52.0 4.59e-01 93.0% 94.1%
3998387 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.62 46.0 4.16e-01 80.7% 60.0%
4938062 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 51.0 4.17e-01 93.0% 94.5%
3596920 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 55.0 4.43e-01 100.0% 87.3%
4033794 11.1.4.34 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SdrD_B 0.62 52.0 4.17e-01 98.2% 78.3%
4274058 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.62 49.0 4.20e-01 87.7% 83.2%
3747178 11.1.1.969 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TRAPPC10 0.61 55.0 4.11e-01 98.2% 63.0%
5070545 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.61 47.0 3.72e-01 84.2% 75.0%
3442191 10.35.1.1 beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N 0.61 52.0 3.65e-01 98.2% 79.8%
4203680 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 41.0 3.12e-01 70.2% 72.3%
6131 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.61 45.0 3.85e-01 80.7% 49.5%
4980801 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 46.0 3.77e-01 82.5% 54.3%
5071851 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 47.0 3.90e-01 84.2% 85.0%
5070101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 49.0 3.89e-01 91.2% 47.5%
3488420 221.1.1.52 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.60 44.0 3.80e-01 80.7% 50.5%
3232128 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 49.0 3.56e-01 93.0% 70.3%
3788140 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.59 49.0 3.67e-01 93.0% 62.8%
4951746 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 47.0 3.85e-01 87.7% 91.4%
4380266 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 47.0 3.06e-01 84.2% 63.0%
5041163 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 49.0 4.01e-01 93.0% 81.0%
4481035 223.1.1.43 a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.59 45.0 3.27e-01 84.2% 80.0%
5047112 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 44.0 3.67e-01 80.7% 87.0%
3713297 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.59 47.0 3.88e-01 89.5% 57.1%
3996048 11.1.1.161 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TPPII 0.59 47.0 3.71e-01 87.7% 55.0%
5014927 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.58 47.0 3.85e-01 91.2% 55.5%
4568752 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.58 47.0 3.85e-01 91.2% 55.5%
4352479 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 45.0 3.74e-01 89.5% 54.5%
3715501 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 48.0 4.01e-01 93.0% 88.0%
4969101 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 46.0 3.81e-01 89.5% 57.1%
1140904 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.58 45.0 3.12e-01 84.2% 61.7%
3924594 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.58 47.0 4.04e-01 93.0% 91.6%
4042767 223.1.1.103 a+b three layers › Profilin-like › sensor domains › sensor domains › CHASE7, PF30448 0.57 45.0 3.37e-01 84.2% 76.3%
3489033 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.57 46.0 3.50e-01 93.0% 59.3%
3924068 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.56 46.0 3.56e-01 91.2% 80.8%
4979173 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 46.0 3.82e-01 93.0% 81.0%
3783891 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 45.0 3.64e-01 93.0% 75.7%
5048561 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 38.0 2.94e-01 70.2% 70.8%
3480786 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 44.0 3.31e-01 93.0% 54.4%
4512007 223.1.1.58 a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.55 43.0 3.07e-01 84.2% 66.7%
4971063 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 43.0 3.62e-01 89.5% 65.7%
4458567 223.1.1.15 a+b three layers › Profilin-like › sensor domains › sensor domains › PhoQ_Sensor 0.54 43.0 3.10e-01 84.2% 88.4%
4382620 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 45.0 3.86e-01 94.7% 91.6%
4557440 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 44.0 3.67e-01 93.0% 81.9%
1948618 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 44.0 3.64e-01 93.0% 79.6%
5053230 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 40.0 3.07e-01 77.2% 76.7%
3414531 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.54 38.0 3.15e-01 73.7% 83.2%
5048580 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.53 38.0 3.21e-01 73.7% 87.6%
4971351 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 39.0 3.07e-01 80.7% 69.6%
D3 medium residues 175-252
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2evrA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 52.0 5.31e-01 85.9% 79.7%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 5.58e-01 82.1% 98.2%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 4.35e-01 84.6% 66.3%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 43.0 4.76e-01 83.3% 89.8%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 49.0 5.21e-01 80.8% 92.5%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.69e-01 85.9% 80.3%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 41.0 4.32e-01 84.6% 77.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.11e-01 83.3% 67.1%
1x43A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.50e-01 83.3% 87.1%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.51e-01 84.6% 79.7%
6uzjA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 41.0 4.48e-01 88.5% 87.3%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 44.0 4.71e-01 88.5% 90.9%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.47e-01 82.1% 88.5%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 39.0 4.37e-01 83.3% 91.2%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.32e-01 83.3% 85.5%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 42.0 4.15e-01 93.6% 67.4%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 3.95e-01 84.6% 68.4%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.13e-01 84.6% 73.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 41.0 4.46e-01 83.3% 89.1%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 43.0 4.26e-01 88.5% 73.8%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 42.0 4.47e-01 83.3% 88.1%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.51 43.0 3.66e-01 92.3% 67.7%
2eqkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 34.0 3.54e-01 97.4% 76.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2410170 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 50.0 5.44e-01 83.3% 90.5%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 51.0 5.49e-01 80.8% 89.2%
4127826 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.70 52.0 5.63e-01 84.6% 93.8%
3659579 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 42.0 4.30e-01 85.9% 70.7%
3504834 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.62e-01 91.0% 89.7%
3912726 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 43.0 4.56e-01 84.6% 84.3%
4878827 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 41.0 4.42e-01 87.2% 88.7%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 43.0 4.58e-01 84.6% 90.8%
3890893 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 39.0 4.45e-01 79.5% 94.5%
3507664 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.59 39.0 4.29e-01 82.1% 88.3%
3619598 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 40.0 3.94e-01 84.6% 65.9%
3782313 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 42.0 4.31e-01 84.6% 80.0%
3999507 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.25e-01 84.6% 84.3%
3695780 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 39.0 3.91e-01 84.6% 68.8%
3938415 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.57 40.0 4.24e-01 87.2% 89.2%
4019491 601.16.1.7 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_9 0.56 41.0 3.05e-01 88.5% 29.8%
3232165 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 42.0 4.07e-01 82.1% 71.1%
3576437 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 43.0 3.97e-01 96.2% 67.0%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.54 41.0 4.25e-01 84.6% 85.3%
3648779 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.53 43.0 3.70e-01 92.3% 66.7%
3811908 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.51 43.0 3.62e-01 96.2% 65.7%
3626691 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 41.0 3.82e-01 98.7% 70.0%
3810562 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.15e-01 98.7% 92.0%
3707345 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 3.91e-01 88.5% 93.3%
3687614 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.50 39.0 3.76e-01 85.9% 86.7%