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SRR1747065_scaffold_38_prodigal-single.1__X__X__00113

Bact-Vir

SRR1747065_scaffold_38_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

73.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-42
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.59e-01 100.0% 37.8%
6a95B00 2.30.130.120 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › 0.55 44.0 4.03e-01 90.5% 98.2%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 41.0 3.56e-01 95.2% 71.4%
3gw6D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 2.56e-01 73.8% 21.7%
7xoiD01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 36.0 2.77e-01 97.6% 28.0%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.52 40.0 3.69e-01 100.0% 66.7%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.51 39.0 2.29e-01 97.6% 77.4%
2i6gB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.65e-01 100.0% 82.9%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 36.0 3.08e-01 95.2% 67.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941505 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.62 48.0 4.35e-01 97.6% 61.5%
4534145 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.61 44.0 3.31e-01 81.0% 30.9%
3786528 109.4.1.87 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec6 0.56 42.0 2.31e-01 97.6% 4.4%
3878685 2492.1.1.26 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MPN_2A_DUB_like 0.56 43.0 3.02e-01 97.6% 28.1%
3268432 109.4.1.1208 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ABC1 0.56 45.0 2.99e-01 95.2% 33.8%
4186468 371.1.1.2 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_2 0.56 46.0 3.32e-01 97.6% 63.1%
5019455 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.55 37.0 2.52e-01 73.8% 26.7%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.55 41.0 2.29e-01 90.5% 10.3%
4007581 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.51e-01 71.4% 60.0%
3563894 59.1.4.2 ↗ beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.54 40.0 2.34e-01 85.7% 47.7%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.54 38.0 2.54e-01 85.7% 33.3%
3718412 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 2.15e-01 73.8% 10.2%
4877695 304.51.1.3 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc 0.51 40.0 2.94e-01 100.0% 67.8%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.51 34.0 2.82e-01 78.6% 32.6%
3253704 1075.1.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane 0.51 36.0 2.28e-01 83.3% 12.0%
3676005 4970.1.1.2 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_A 0.50 35.0 2.22e-01 95.2% 19.2%
D2 medium residues 44-154
PDB
Domain cluster: rep: NC_071007.1__YP_010675785.1__PQD16_gp226__00012__D789-811_971-1048
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o8bB02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.53 37.0 3.20e-01 78.4% 43.5%
2wnsA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 35.0 2.95e-01 71.2% 90.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979705 2484.1.1.248 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GpA_nuclease 0.60 50.0 3.74e-01 88.3% 44.2%
3173882 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 44.0 3.02e-01 84.7% 93.6%
3697894 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.53 37.0 2.48e-01 73.9% 69.6%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.50 40.0 2.96e-01 84.7% 53.1%
D3 medium residues 167-245
PDB