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SRR1747065_scaffold_38_prodigal-single.1__X__X__00166
Bact-VirSRR1747065_scaffold_38_prodigal-single.1__X__X__00166
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-56
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.75 | 56.0 | 3.88e-01 | 85.7% | 25.1% |
| 3iylB02 | 1.10.2050.10 | Mainly Alpha › Orthogonal Bundle › Protein mu-1, chain B, domain 3 › Protein mu-1, chain B, domain 3 | 0.71 | 58.0 | 4.49e-01 | 94.6% | 61.2% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.70 | 59.0 | 4.02e-01 | 96.4% | 41.5% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 57.0 | 4.34e-01 | 91.1% | 38.8% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 53.0 | 4.96e-01 | 87.5% | 66.2% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.69 | 58.0 | 4.00e-01 | 98.2% | 41.0% |
| 2hxoA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.65 | 51.0 | 3.88e-01 | 91.1% | 41.7% |
| 3ic9A02 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.63 | 50.0 | 4.73e-01 | 89.3% | 84.3% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.63 | 49.0 | 4.15e-01 | 87.5% | 76.3% |
| 4tvsA00 | 3.40.50.12190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 49.0 | 3.33e-01 | 89.3% | 24.1% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 42.0 | 4.40e-01 | 71.4% | 76.5% |
| 4b1bA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 51.0 | 3.11e-01 | 98.2% | 23.3% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 48.0 | 3.37e-01 | 94.6% | 47.9% |
| 2k5gA01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 43.0 | 3.12e-01 | 85.7% | 25.0% |
| 3mfiA03 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 41.0 | 3.80e-01 | 87.5% | 56.6% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.50e-01 | 94.6% | 46.7% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 38.0 | 3.70e-01 | 75.0% | 77.4% |
| 3afhA04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.54 | 36.0 | 3.71e-01 | 73.2% | 78.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015915 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.71 | 54.0 | 4.86e-01 | 83.9% | 60.0% |
| 3607753 | 3291.1.1.123 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › DUF4110 | 0.67 | 54.0 | 4.34e-01 | 89.3% | 50.4% |
| 3614296 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.63 | 48.0 | 3.11e-01 | 87.5% | 16.8% |
| 3265068 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.63 | 50.0 | 3.25e-01 | 96.4% | 25.2% |
| 4275372 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.62 | 48.0 | 3.43e-01 | 85.7% | 32.0% |
| 3973303 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.61 | 49.0 | 4.01e-01 | 92.9% | 47.8% |
| 3692508 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.60 | 49.0 | 4.19e-01 | 96.4% | 63.0% |
| 3363913 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 46.0 | 3.92e-01 | 94.6% | 92.0% |
| 3789792 | 164.1.1.0 ↗ | alpha bundles › Chorismate mutase II › Chorismate mutase II › Chorismate mutase II | 0.56 | 44.0 | 3.86e-01 | 92.9% | 56.8% |
D2
medium
residues 57-226
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00692.25 best | dUTPase | 48.1 | 1.40e-12 | 78.2% | 95.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5y5qC00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.83 | 58.0 | 6.38e-01 | 70.6% | 87.9% |
| 1pkhB00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.73 | 52.0 | 5.21e-01 | 72.9% | 88.6% |
| 1xs1A00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.73 | 57.0 | 5.43e-01 | 80.0% | 89.6% |
| 4xjcF00 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.72 | 56.0 | 5.64e-01 | 79.4% | 88.2% |
| 2r9qA02 | 2.70.40.10 | Mainly Beta › Distorted Sandwich › Deoxyuridine 5'-Triphosphate Nucleotidohydrolase; Chain A › Deoxyuridine triphosphatase (dUTPase) | 0.70 | 49.0 | 5.06e-01 | 71.2% | 89.6% |
| 1o6uA02 | 2.60.120.680 | Mainly Beta › Sandwich › Jelly Rolls › GOLD domain | 0.52 | 32.0 | 3.86e-01 | 84.7% | 96.2% |
| 4uypA01 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 38.0 | 4.14e-01 | 92.4% | 91.4% |
| 4kgmA00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.52 | 37.0 | 3.34e-01 | 72.4% | 93.0% |
| 3thdA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 35.0 | 3.81e-01 | 75.9% | 83.9% |
| 2vn4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.49e-01 | 72.4% | 82.5% |
| 1iarB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 29.0 | 3.70e-01 | 85.3% | 99.0% |
| 1sefA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 32.0 | 3.68e-01 | 75.3% | 88.2% |
| 4dohB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 30.0 | 3.64e-01 | 90.0% | 93.3% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2709093 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.90 | 56.0 | 6.04e-01 | 70.0% | 71.3% |
| 2793462 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.90 | 56.0 | 6.50e-01 | 70.0% | 84.3% |
| 3590216 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.90 | 68.0 | 7.28e-01 | 78.8% | 88.0% |
| 4162544 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.89 | 56.0 | 5.98e-01 | 70.0% | 71.3% |
| 162469 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.89 | 56.0 | 6.83e-01 | 72.4% | 94.7% |
| 4862744 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.87 | 59.0 | 6.76e-01 | 70.0% | 88.6% |
| 5032029 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.80 | 54.0 | 5.57e-01 | 75.9% | 71.9% |
| 5035269 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.79 | 53.0 | 5.42e-01 | 75.9% | 69.7% |
| 4966568 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.78 | 55.0 | 6.03e-01 | 81.2% | 86.4% |
| 1247195 | 70.2.1.1 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › dUTPase | 0.76 | 52.0 | 5.78e-01 | 77.6% | 86.0% |
| None | — | 0.74 | 58.0 | 5.51e-01 | 80.0% | 87.6% | |
| None | — | 0.74 | 57.0 | 5.44e-01 | 79.4% | 84.1% | |
| 4052918 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 57.0 | 5.43e-01 | 80.0% | 88.7% |
| 3271362 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 56.0 | 5.32e-01 | 79.4% | 88.0% |
| 5064841 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 57.0 | 5.40e-01 | 79.4% | 86.2% |
| None | — | 0.73 | 57.0 | 5.41e-01 | 80.0% | 88.7% | |
| 4937229 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 57.0 | 5.41e-01 | 80.0% | 88.2% |
| 4629365 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 56.0 | 5.33e-01 | 79.4% | 83.9% |
| 3960338 | 70.2.1.0 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like | 0.73 | 56.0 | 5.41e-01 | 79.4% | 86.3% |
| 4967931 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 54.0 | 5.59e-01 | 75.9% | 85.0% |
| 4136503 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.73 | 56.0 | 5.35e-01 | 78.8% | 89.5% |
| 4041362 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.72 | 53.0 | 5.55e-01 | 75.9% | 88.1% |
| 5031214 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.72 | 56.0 | 5.37e-01 | 79.4% | 85.8% |
| 5043784 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.72 | 56.0 | 5.27e-01 | 80.0% | 88.5% |
| None | — | 0.72 | 56.0 | 5.57e-01 | 80.0% | 88.0% | |
| 5002855 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.72 | 53.0 | 5.30e-01 | 75.3% | 83.2% |
| 5025621 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.72 | 55.0 | 5.72e-01 | 79.4% | 87.5% |
| None | — | 0.72 | 53.0 | 5.35e-01 | 75.9% | 84.7% | |
| 5067824 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.71 | 55.0 | 5.16e-01 | 80.0% | 87.8% |
| 4993749 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.71 | 55.0 | 5.45e-01 | 80.0% | 88.3% |
| 4080854 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.71 | 55.0 | 5.85e-01 | 81.8% | 90.0% |
| 5062200 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.71 | 56.0 | 5.72e-01 | 81.2% | 86.6% |
| 3602611 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.70 | 52.0 | 5.48e-01 | 75.9% | 91.0% |
| 5022441 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.70 | 52.0 | 5.49e-01 | 75.9% | 90.9% |
| 5068130 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.70 | 55.0 | 5.53e-01 | 81.8% | 89.1% |
| 4984664 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.70 | 54.0 | 5.32e-01 | 79.4% | 86.7% |
| None | — | 0.70 | 55.0 | 5.43e-01 | 81.8% | 89.4% | |
| 3256286 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.69 | 55.0 | 5.48e-01 | 81.8% | 87.4% |
| 4997594 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.69 | 51.0 | 5.23e-01 | 75.9% | 86.6% |
| 999206 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.69 | 54.0 | 5.60e-01 | 80.6% | 89.9% |
| 5042019 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.69 | 54.0 | 5.54e-01 | 81.8% | 88.5% |
| 5056309 | 70.2.1.5 ↗ | beta barrels › beta-clip › dUTPase-like › dUTPase-like › DCD | 0.69 | 54.0 | 5.62e-01 | 81.8% | 88.7% |
| 3604314 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.57 | 31.0 | 3.76e-01 | 92.4% | 81.0% |
| 4266103 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.56 | 35.0 | 3.92e-01 | 85.3% | 80.0% |
| 3696778 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.52 | 29.0 | 3.28e-01 | 71.8% | 71.2% |
| 3940463 | 10.32.1.73 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 | 0.51 | 33.0 | 3.60e-01 | 75.9% | 76.6% |
| 1346395 | 10.32.1.73 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD_1 | 0.51 | 34.0 | 3.58e-01 | 76.5% | 73.7% |