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SRR1747065_scaffold_38_prodigal-single.1__X__X__00170
Bact-VirSRR1747065_scaffold_38_prodigal-single.1__X__X__00170
Identity
- Kingdom:
- phage
Quality
65.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 50-171
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 28.0 | 3.77e-01 | 92.6% | 74.2% |
| 4ncdA02 | 2.60.40.3970 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 41.0 | 4.67e-01 | 94.3% | 98.9% |
| 2xwxA03 | 2.60.40.2550 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 42.0 | 4.71e-01 | 91.8% | 92.9% |
| 2vtfA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 40.0 | 4.56e-01 | 86.9% | 93.4% |
| 4nn5C01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 4.47e-01 | 98.4% | 97.6% |
| 2w1nA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 38.0 | 4.56e-01 | 94.3% | 100.0% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.56 | 37.0 | 4.06e-01 | 92.6% | 82.8% |
| 4liqE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 43.0 | 4.69e-01 | 91.0% | 97.0% |
| 3vy8X00 | 2.40.160.10 | Mainly Beta › Beta Barrel › Porin › Porin | 0.56 | 38.0 | 2.83e-01 | 70.5% | 76.0% |
| 3cxeC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 4.52e-01 | 93.4% | 96.9% |
| 5c71A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 39.0 | 4.41e-01 | 94.3% | 95.8% |
| 5c86A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 39.0 | 4.28e-01 | 93.4% | 93.1% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 33.0 | 4.04e-01 | 79.5% | 97.5% |
| 4yokA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 41.0 | 4.36e-01 | 91.8% | 95.2% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 4.37e-01 | 95.9% | 98.0% |
| 4fxtA02 | 2.60.40.2060 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 40.0 | 4.28e-01 | 91.8% | 94.4% |
| 5u8rA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 41.0 | 4.39e-01 | 94.3% | 97.2% |
| 1t4lB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 27.0 | 3.15e-01 | 94.3% | 70.0% |
| 3obaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 45.0 | 4.46e-01 | 94.3% | 97.6% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 42.0 | 4.41e-01 | 94.3% | 97.3% |
| 3t69A01 | 3.30.420.300 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain | 0.50 | 28.0 | 3.50e-01 | 93.4% | 89.3% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036649 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.77 | 32.0 | 4.07e-01 | 79.5% | 64.0% |
| 3739140 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.74 | 31.0 | 4.06e-01 | 79.5% | 68.6% |
| 5045390 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.74 | 32.0 | 3.88e-01 | 80.3% | 61.3% |
| 5033562 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.73 | 31.0 | 3.79e-01 | 79.5% | 60.0% |
| 4930080 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.73 | 31.0 | 3.85e-01 | 80.3% | 61.3% |
| 3654254 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.73 | 32.0 | 4.29e-01 | 79.5% | 76.9% |
| 4943226 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.73 | 31.0 | 3.82e-01 | 80.3% | 61.3% |
| 3468653 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 42.0 | 5.15e-01 | 93.4% | 97.3% |
| 3321872 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.69 | 30.0 | 3.97e-01 | 80.3% | 73.5% |
| 3961021 | 10.14.1.2 ↗ | beta sandwiches › jelly-roll › Trp RNA-binding attenuation protein (TRAP) › Trp RNA-binding attenuation protein (TRAP) › PF27111 | 0.67 | 30.0 | 4.14e-01 | 91.0% | 85.0% |
| 4170578 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.66 | 29.0 | 3.37e-01 | 80.3% | 54.4% |
| 4165569 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.66 | 29.0 | 3.24e-01 | 80.3% | 49.0% |
| 4017407 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.65 | 30.0 | 3.84e-01 | 79.5% | 74.3% |
| 4970388 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 39.0 | 4.85e-01 | 82.8% | 100.0% |
| 3578087 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 38.0 | 4.74e-01 | 83.6% | 97.3% |
| 3937926 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 39.0 | 4.71e-01 | 91.0% | 95.0% |
| 5063417 | 11.1.1.236 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mannosidase_ig | 0.60 | 41.0 | 4.59e-01 | 94.3% | 89.5% |
| 3627576 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 33.0 | 4.34e-01 | 77.9% | 100.0% |
| 4985684 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 43.0 | 4.85e-01 | 94.3% | 97.9% |
| 3267730 | 11.2.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 | 0.57 | 47.0 | 4.54e-01 | 93.4% | 76.4% |
| 4948921 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 41.0 | 4.62e-01 | 92.6% | 96.8% |
| 3618165 | 11.1.4.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 | 0.57 | 42.0 | 4.44e-01 | 99.2% | 86.4% |
| 3543786 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 39.0 | 4.40e-01 | 91.8% | 91.6% |
| 3620798 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.63e-01 | 87.7% | 95.0% |
| 5037226 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 37.0 | 4.21e-01 | 92.6% | 91.1% |
| 3615884 | 11.1.1.1189 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › XRCC1_N | 0.56 | 32.0 | 4.13e-01 | 78.7% | 100.0% |
| 1187920 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 29.0 | 3.68e-01 | 91.0% | 87.0% |
| 3846627 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 4.35e-01 | 94.3% | 90.0% |
| 3393658 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.54 | 40.0 | 4.35e-01 | 94.3% | 92.0% |
| 4473935 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 39.0 | 4.38e-01 | 90.2% | 96.8% |
| 3302003 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.54 | 42.0 | 3.62e-01 | 93.4% | 53.5% |
| 3535171 | 11.1.1.665 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › THSD1_D3 | 0.54 | 40.0 | 4.26e-01 | 94.3% | 90.5% |
| 3709979 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.53 | 45.0 | 3.50e-01 | 88.5% | 64.5% |
| 3884372 | 11.1.1.711 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FN3_IL27B_N | 0.53 | 40.0 | 4.31e-01 | 95.1% | 95.0% |
| 4965622 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 42.0 | 4.44e-01 | 91.8% | 92.7% |
| 3789009 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 39.0 | 3.72e-01 | 93.4% | 67.1% |
| 3842362 | 1.1.5.76 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT | 0.52 | 36.0 | 4.03e-01 | 81.1% | 92.6% |
| 5083247 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 4.48e-01 | 95.9% | 100.0% |
| 4963894 | 11.1.1.1442 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29449 | 0.52 | 44.0 | 4.64e-01 | 91.8% | 99.1% |
| 5029910 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 39.0 | 3.89e-01 | 91.8% | 75.4% |
| 3510414 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.51 | 30.0 | 3.50e-01 | 81.1% | 85.0% |
| 3407319 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 46.0 | 4.56e-01 | 100.0% | 91.5% |
| 3584555 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.51 | 30.0 | 3.56e-01 | 83.6% | 95.7% |
| 3924219 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 4.31e-01 | 91.8% | 95.5% |
| 4144303 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.50 | 40.0 | 3.74e-01 | 92.6% | 69.0% |
| 3220787 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 4.29e-01 | 93.4% | 93.8% |
| 4169299 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.50 | 31.0 | 3.27e-01 | 90.2% | 67.9% |
| 5072652 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 40.0 | 4.21e-01 | 92.6% | 92.7% |
D2
medium
residues 1-45_179-278