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SRR1747065_scaffold_38_prodigal-single.1__X__X__00179
Bact-VirSRR1747065_scaffold_38_prodigal-single.1__X__X__00179
Identity
- Kingdom:
- phage
Quality
88.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-78
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 42.0 | 4.92e-01 | 89.5% | 100.0% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.64 | 47.0 | 4.97e-01 | 100.0% | 89.4% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 42.0 | 4.85e-01 | 85.5% | 94.5% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 50.0 | 4.89e-01 | 97.4% | 80.7% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 46.0 | 4.87e-01 | 98.7% | 90.9% |
| 1y96A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 51.0 | 4.97e-01 | 100.0% | 81.4% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 4.92e-01 | 94.7% | 95.5% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 45.0 | 4.67e-01 | 97.4% | 94.1% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.58 | 50.0 | 4.73e-01 | 100.0% | 79.6% |
| 5mkiH00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 45.0 | 4.66e-01 | 98.7% | 94.4% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 47.0 | 4.29e-01 | 100.0% | 68.6% |
| 2re7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 47.0 | 4.02e-01 | 96.1% | 97.0% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 44.0 | 4.60e-01 | 98.7% | 97.1% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 4.49e-01 | 98.7% | 94.5% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 44.0 | 4.59e-01 | 98.7% | 97.2% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.55 | 39.0 | 3.03e-01 | 75.0% | 34.3% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 39.0 | 2.94e-01 | 77.6% | 30.4% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.53 | 46.0 | 3.88e-01 | 100.0% | 68.8% |
| 5jenA02 | 3.90.640.20 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase | 0.53 | 43.0 | 4.00e-01 | 90.8% | 89.9% |
| 2asfA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 45.0 | 3.85e-01 | 94.7% | 95.2% |
| 2vgmA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.53 | 44.0 | 3.92e-01 | 100.0% | 68.0% |
| 2v5oA03 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.52 | 44.0 | 3.69e-01 | 96.1% | 92.0% |
| 2c4iA01 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.52 | 42.0 | 3.77e-01 | 94.7% | 97.5% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.27e-01 | 84.2% | 81.9% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 40.0 | 3.23e-01 | 84.2% | 83.6% |
| 4l82A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 39.0 | 3.20e-01 | 84.2% | 84.0% |
| 4bj8K00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.51 | 42.0 | 3.77e-01 | 97.4% | 100.0% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.11e-01 | 84.2% | 81.3% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 38.0 | 3.33e-01 | 80.3% | 96.6% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 36.0 | 3.65e-01 | 73.7% | 83.8% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.15e-01 | 84.2% | 83.3% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 39.0 | 3.03e-01 | 84.2% | 73.7% |
| 2vpaA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 43.0 | 3.26e-01 | 98.7% | 73.5% |
| 1i9gA01 | 3.10.330.20 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.50 | 38.0 | 4.08e-01 | 92.1% | 95.3% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031509 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 50.0 | 5.50e-01 | 100.0% | 100.0% |
| 4451993 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.66 | 47.0 | 5.18e-01 | 98.7% | 95.0% |
| 3492557 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.66 | 52.0 | 4.79e-01 | 100.0% | 65.0% |
| 4662294 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 46.0 | 5.15e-01 | 98.7% | 100.0% |
| 3272363 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.64 | 51.0 | 4.77e-01 | 96.1% | 69.5% |
| 3907190 | 4.1.1.219 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM12_LSM | 0.62 | 50.0 | 4.66e-01 | 92.1% | 70.5% |
| 4953913 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.61 | 43.0 | 4.71e-01 | 100.0% | 95.0% |
| 4221708 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 47.0 | 4.84e-01 | 94.7% | 91.4% |
| 3971321 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.60 | 48.0 | 4.98e-01 | 97.4% | 95.7% |
| 3829527 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.60 | 44.0 | 3.50e-01 | 77.6% | 88.4% |
| 3826751 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.59 | 47.0 | 4.72e-01 | 98.7% | 85.0% |
| 3740784 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.57e-01 | 90.8% | 78.8% |
| 4972587 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.58 | 43.0 | 3.38e-01 | 78.9% | 78.8% |
| 4387099 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.58 | 51.0 | 5.02e-01 | 98.7% | 93.8% |
| 4018672 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.58 | 50.0 | 4.45e-01 | 100.0% | 73.0% |
| 3658643 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.57 | 48.0 | 3.92e-01 | 100.0% | 49.0% |
| 3257390 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 50.0 | 3.26e-01 | 94.7% | 26.5% |
| 4642857 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 49.0 | 4.84e-01 | 97.4% | 95.0% |
| 4952430 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.57 | 40.0 | 3.55e-01 | 73.7% | 88.2% |
| 3990705 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.57 | 47.0 | 3.76e-01 | 100.0% | 75.6% |
| 3707346 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 49.0 | 4.81e-01 | 97.4% | 94.0% |
| 4425420 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 49.0 | 4.78e-01 | 98.7% | 89.4% |
| 5075579 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 46.0 | 4.54e-01 | 98.7% | 86.3% |
| 4596087 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 47.0 | 4.78e-01 | 97.4% | 96.0% |
| 4283343 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.56 | 48.0 | 4.80e-01 | 97.4% | 91.3% |
| 3319789 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.55 | 49.0 | 4.79e-01 | 100.0% | 89.4% |
| 3994175 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.55 | 46.0 | 3.94e-01 | 96.1% | 93.8% |
| 3502962 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.54 | 46.0 | 4.58e-01 | 100.0% | 98.8% |
| 5054152 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.54 | 47.0 | 4.03e-01 | 100.0% | 71.2% |
| 3500378 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 45.0 | 4.08e-01 | 100.0% | 71.8% |
| 3725169 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.53 | 38.0 | 2.99e-01 | 78.9% | 34.3% |
| 4398865 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.52 | 40.0 | 3.72e-01 | 81.6% | 87.4% |
| 5006930 | 11.1.1.1395 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › HcyBio | 0.52 | 40.0 | 3.52e-01 | 86.8% | 79.2% |
| 4233298 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.52 | 40.0 | 3.14e-01 | 84.2% | 76.5% |
| 5058724 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.52 | 44.0 | 3.84e-01 | 100.0% | 72.8% |
| 3629480 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.52 | 44.0 | 4.23e-01 | 100.0% | 91.1% |
| 3970026 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.52 | 44.0 | 2.96e-01 | 96.1% | 86.5% |
| 3270749 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.51 | 44.0 | 4.40e-01 | 98.7% | 93.8% |
| 3883725 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 39.0 | 3.42e-01 | 81.6% | 94.7% |
| 3704345 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 28.0 | 2.97e-01 | 84.2% | 58.5% |
| 5015688 | 1.1.8.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › HcyBio | 0.51 | 38.0 | 3.59e-01 | 85.5% | 100.0% |
| 3592995 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 44.0 | 4.26e-01 | 97.4% | 94.1% |
D2
medium
residues 82-114
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.88 | 75.0 | 5.96e-01 | 100.0% | 49.3% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.82 | 62.0 | 6.02e-01 | 100.0% | 75.6% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.73 | 59.0 | 3.78e-01 | 90.9% | 19.7% |
| 1ff9A03 | 1.10.1870.10 | Mainly Alpha › Orthogonal Bundle › Domain 3, Saccharopine reductase › Domain 3, Saccharopine reductase | 0.70 | 59.0 | 4.27e-01 | 100.0% | 62.0% |
| 2e5yA02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.70 | 61.0 | 5.55e-01 | 100.0% | 82.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.66 | 53.0 | 4.13e-01 | 100.0% | 45.9% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.65 | 53.0 | 4.09e-01 | 100.0% | 66.7% |
| 2py5A04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.61 | 46.0 | 4.63e-01 | 97.0% | 97.2% |
| 2y4tA02 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 44.0 | 4.13e-01 | 100.0% | 92.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1414380 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.90 | 74.0 | 7.38e-01 | 90.9% | 88.2% |
| 3721656 | 630.1.1.2 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › PF29521 | 0.84 | 70.0 | 4.66e-01 | 100.0% | 24.4% |
| 324980 | 397.4.1.0 ↗ | few secondary structure elements › Toxic hairpin › VhTI-like › VhTI-like | 0.78 | 55.0 | 5.50e-01 | 81.8% | 100.0% |
| 3994520 | 11.12.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD,Neur_chan_memb | 0.76 | 62.0 | 3.67e-01 | 100.0% | 11.8% |
| 3964804 | 192.29.1.271 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Sipho_Gp157 | 0.75 | 61.0 | 4.44e-01 | 100.0% | 36.0% |
| 3998747 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.75 | 60.0 | 3.57e-01 | 100.0% | 12.2% |
| 3640538 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.73 | 57.0 | 4.74e-01 | 100.0% | 47.1% |