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SRR1747065_scaffold_38_prodigal-single.1__X__X__00205
Bact-VirSRR1747065_scaffold_38_prodigal-single.1__X__X__00205
Identity
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-79
Domain cluster:
rep: OP756059.1__UZO33122.1__CBSLWZGG_CDS168__00169__D10-71
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM01 | 3.90.75.20 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › | 0.90 | 70.0 | 6.22e-01 | 92.4% | 60.4% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 37.0 | 3.89e-01 | 81.0% | 56.8% |
| 4qucA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 37.0 | 4.18e-01 | 81.0% | 75.0% |
| 6guuA01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 37.0 | 4.30e-01 | 81.0% | 85.2% |
| 4iupB01 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 43.0 | 4.69e-01 | 88.6% | 91.9% |
| 1nuiA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.56 | 31.0 | 3.86e-01 | 91.1% | 100.0% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.54 | 33.0 | 3.45e-01 | 82.3% | 64.9% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.54 | 43.0 | 4.07e-01 | 96.2% | 71.6% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 3.92e-01 | 88.6% | 84.8% |
| 3lmlA01 | 3.10.450.690 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 42.0 | 3.74e-01 | 89.9% | 100.0% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 33.0 | 2.99e-01 | 79.7% | 44.7% |
| 2k3aA01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.52 | 37.0 | 3.53e-01 | 77.2% | 95.0% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 37.0 | 3.82e-01 | 87.3% | 84.7% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3555043 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.66 | 37.0 | 3.85e-01 | 81.0% | 57.3% |
| 3310899 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.64 | 38.0 | 3.78e-01 | 82.3% | 55.3% |
| 3585538 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.62 | 42.0 | 3.91e-01 | 88.6% | 55.0% |
| 3793962 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.62 | 42.0 | 4.05e-01 | 88.6% | 61.1% |
| 3441142 | 4.8.1.7 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE | 0.62 | 40.0 | 4.59e-01 | 82.3% | 94.5% |
| 4184523 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.58 | 40.0 | 3.71e-01 | 72.2% | 58.0% |
| 4056113 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.58 | 40.0 | 3.69e-01 | 72.2% | 58.0% |
| 3511564 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.57 | 40.0 | 3.69e-01 | 72.2% | 60.0% |
| 3798312 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.57 | 38.0 | 3.99e-01 | 87.3% | 77.1% |
| 4297022 | 5.1.3.26 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 | 0.56 | 47.0 | 2.94e-01 | 97.5% | 92.0% |
| 3592422 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 40.0 | 2.56e-01 | 77.2% | 60.5% |
| 5032200 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.54 | 34.0 | 3.13e-01 | 79.7% | 47.6% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.54 | 36.0 | 3.86e-01 | 87.3% | 83.1% |
| 4003932 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.53 | 36.0 | 3.18e-01 | 70.9% | 77.5% |
| 4954091 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.53 | 34.0 | 2.98e-01 | 81.0% | 41.7% |
| 5018715 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 33.0 | 3.68e-01 | 70.9% | 83.3% |
| 3239418 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 40.0 | 2.96e-01 | 83.5% | 73.5% |
| 3277727 | 4.8.1.43 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP | 0.53 | 38.0 | 3.62e-01 | 84.8% | 63.2% |
| 3948020 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.53 | 37.0 | 3.37e-01 | 73.4% | 87.3% |
| 1140466 | 827.1.1.1 ↗ | a+b two layers › Integrin beta tail domain › Integrin beta tail domain › Integrin beta tail domain › Integrin_B_tail | 0.53 | 30.0 | 3.07e-01 | 77.2% | 54.5% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.52 | 35.0 | 3.80e-01 | 88.6% | 84.6% |
| 5037381 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.52 | 31.0 | 3.57e-01 | 92.4% | 92.0% |
| 5074491 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.52 | 34.0 | 3.00e-01 | 81.0% | 42.4% |
| 3888254 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 29.0 | 3.46e-01 | 75.9% | 93.3% |
| 3935716 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.52 | 41.0 | 4.17e-01 | 92.4% | 90.7% |
| 4018438 | 5.1.2.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 | 0.51 | 43.0 | 2.99e-01 | 98.7% | 69.5% |
| 3410370 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 38.0 | 4.03e-01 | 89.9% | 91.4% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.51 | 36.0 | 3.91e-01 | 84.8% | 92.3% |
| 3595243 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.50 | 38.0 | 2.62e-01 | 86.1% | 20.6% |
| 4073200 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.50 | 37.0 | 4.04e-01 | 86.1% | 96.9% |
D2
medium
residues 113-179
Domain cluster:
representative
CATH (62)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 52.0 | 5.68e-01 | 91.0% | 85.2% |
| 1tc3C00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 50.0 | 5.63e-01 | 73.1% | 86.3% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.76 | 52.0 | 4.19e-01 | 77.6% | 38.1% |
| 4pcqA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 47.0 | 5.27e-01 | 70.1% | 90.0% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 44.0 | 5.07e-01 | 71.6% | 91.1% |
| 3ljlA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.71 | 52.0 | 4.04e-01 | 79.1% | 38.9% |
| 2cfxA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 48.0 | 5.37e-01 | 74.6% | 96.0% |
| 1k78A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 49.0 | 4.97e-01 | 74.6% | 81.8% |
| 1r71A01 | 1.10.10.730 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain | 0.70 | 54.0 | 5.74e-01 | 89.6% | 100.0% |
| 1sfxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 49.0 | 4.26e-01 | 74.6% | 66.3% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 49.0 | 5.18e-01 | 73.1% | 93.1% |
| 6uvuA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.18e-01 | 73.1% | 63.5% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 48.0 | 4.81e-01 | 77.6% | 73.1% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.69 | 48.0 | 4.34e-01 | 73.1% | 56.7% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 50.0 | 4.62e-01 | 80.6% | 73.3% |
| 3cuoD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 48.0 | 4.30e-01 | 74.6% | 66.0% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.37e-01 | 74.6% | 75.9% |
| 1l3lA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.87e-01 | 73.1% | 87.3% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 46.0 | 4.88e-01 | 79.1% | 85.7% |
| 4d7kA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 48.0 | 4.28e-01 | 76.1% | 66.7% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 4.65e-01 | 74.6% | 93.1% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 47.0 | 3.72e-01 | 74.6% | 49.6% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 46.0 | 4.62e-01 | 73.1% | 78.6% |
| 3p7nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 4.59e-01 | 73.1% | 73.6% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 3.69e-01 | 74.6% | 51.1% |
| 2fxaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 51.0 | 3.94e-01 | 85.1% | 51.3% |
| 2q0oA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 4.74e-01 | 74.6% | 80.6% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 3.96e-01 | 77.6% | 62.5% |
| 3g3zA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 45.0 | 4.65e-01 | 73.1% | 100.0% |
| 3e6mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 50.0 | 3.96e-01 | 85.1% | 56.2% |
| 7l1iA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 51.0 | 3.93e-01 | 86.6% | 56.2% |
| 2htjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 4.84e-01 | 76.1% | 100.0% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 46.0 | 3.79e-01 | 77.6% | 50.4% |
| 2rdpA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 3.90e-01 | 83.6% | 58.6% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 4.03e-01 | 74.6% | 69.4% |
| 3bj6B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 48.0 | 3.74e-01 | 82.1% | 54.3% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.63 | 55.0 | 5.06e-01 | 100.0% | 88.8% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.63 | 52.0 | 4.20e-01 | 94.0% | 96.4% |
| 3fm5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 3.95e-01 | 85.1% | 57.7% |
| 1g2hA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 46.0 | 4.74e-01 | 80.6% | 91.8% |
| 3cjnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 3.79e-01 | 85.1% | 56.8% |
| 2hr3D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 45.0 | 4.64e-01 | 77.6% | 95.2% |
| 3oopA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 3.86e-01 | 85.1% | 61.2% |
| 2fbiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 3.87e-01 | 86.6% | 66.2% |
| 2dk5A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 44.0 | 4.51e-01 | 79.1% | 100.0% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.61 | 41.0 | 3.85e-01 | 70.1% | 68.6% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 3.83e-01 | 83.6% | 69.0% |
| 5jbrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 52.0 | 4.88e-01 | 100.0% | 97.7% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 49.0 | 3.96e-01 | 89.6% | 59.0% |
| 2v9vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.60e-01 | 79.1% | 100.0% |
| 4fqnC00 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.61 | 46.0 | 4.37e-01 | 86.6% | 71.8% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.61 | 52.0 | 4.08e-01 | 100.0% | 56.0% |
| 3keoA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 4.29e-01 | 77.6% | 95.8% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 3.82e-01 | 88.1% | 67.9% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 42.0 | 3.81e-01 | 73.1% | 70.0% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.57 | 48.0 | 4.05e-01 | 98.5% | 84.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.57 | 44.0 | 4.19e-01 | 86.6% | 93.9% |
| 4nvsA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 44.0 | 3.35e-01 | 86.6% | 38.1% |
| 5zyrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 43.0 | 3.45e-01 | 91.0% | 76.2% |
| 3szpA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.55e-01 | 76.1% | 74.2% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.52 | 36.0 | 3.05e-01 | 73.1% | 69.7% |
| 4ga4A01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.50 | 38.0 | 3.89e-01 | 86.6% | 100.0% |
ECOD (90)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 139963 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 52.0 | 5.68e-01 | 91.0% | 85.2% |
| 3941922 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 57.0 | 6.16e-01 | 95.5% | 100.0% |
| 5003692 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.74 | 49.0 | 5.01e-01 | 73.1% | 70.8% |
| 4980888 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 50.0 | 5.10e-01 | 79.1% | 72.3% |
| 5077614 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.74 | 59.0 | 5.70e-01 | 86.6% | 89.3% |
| 3983783 | 101.1.1.13 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_1 | 0.73 | 53.0 | 4.74e-01 | 77.6% | 55.8% |
| 3410877 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.72 | 50.0 | 5.00e-01 | 74.6% | 70.0% |
| 4961377 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.71 | 49.0 | 4.86e-01 | 74.6% | 68.6% |
| 4943227 | 101.1.1.63 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 | 0.71 | 47.0 | 5.43e-01 | 79.1% | 100.0% |
| 5068679 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.71 | 48.0 | 5.14e-01 | 79.1% | 85.5% |
| 4949735 | 101.1.2.150 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_45 | 0.71 | 54.0 | 4.99e-01 | 82.1% | 84.7% |
| 3279531 | 101.1.2.140 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type | 0.71 | 48.0 | 5.24e-01 | 74.6% | 87.3% |
| 4978146 | 101.1.1.62 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_24 | 0.71 | 48.0 | 4.81e-01 | 74.6% | 68.6% |
| 4979452 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 48.0 | 4.79e-01 | 74.6% | 68.6% |
| 5055912 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 47.0 | 4.69e-01 | 77.6% | 67.1% |
| 5062184 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.70 | 47.0 | 4.93e-01 | 77.6% | 78.3% |
| 3944370 | 101.1.1.318 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF30335 | 0.70 | 56.0 | 5.55e-01 | 95.5% | 85.7% |
| 5072206 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.70 | 62.0 | 5.14e-01 | 100.0% | 64.2% |
| 4979948 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 47.0 | 5.05e-01 | 73.1% | 85.5% |
| 5057453 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.69 | 62.0 | 5.06e-01 | 100.0% | 59.2% |
| 3164718 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.69 | 47.0 | 4.60e-01 | 74.6% | 64.0% |
| 4978386 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.69 | 47.0 | 4.75e-01 | 74.6% | 70.6% |
| 5056682 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 49.0 | 4.88e-01 | 76.1% | 84.3% |
| 5020331 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 49.0 | 5.04e-01 | 91.0% | 78.5% |
| 5012661 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.69 | 48.0 | 4.70e-01 | 74.6% | 84.0% |
| 5060354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 48.0 | 4.87e-01 | 79.1% | 75.4% |
| 3565285 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.68 | 46.0 | 4.69e-01 | 77.6% | 72.3% |
| 3404418 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.68 | 49.0 | 4.84e-01 | 77.6% | 72.9% |
| 5047331 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.20e-01 | 77.6% | 52.2% |
| 4978272 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.68 | 60.0 | 5.07e-01 | 100.0% | 65.2% |
| 4990335 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.68 | 61.0 | 5.08e-01 | 100.0% | 64.3% |
| 4944620 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 46.0 | 4.99e-01 | 74.6% | 87.3% |
| 3942571 | 101.1.1.198 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › KorB | 0.68 | 53.0 | 5.44e-01 | 92.5% | 90.8% |
| 5049375 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.68 | 60.0 | 4.80e-01 | 100.0% | 52.6% |
| 4935112 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.68 | 60.0 | 4.97e-01 | 100.0% | 62.5% |
| 4494836 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.68 | 59.0 | 4.81e-01 | 100.0% | 58.5% |
| 5045965 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.67 | 60.0 | 5.26e-01 | 100.0% | 75.0% |
| 4945039 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.67 | 47.0 | 4.91e-01 | 76.1% | 81.7% |
| 5043574 | 182.1.3.3 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › PriX › DNA_primase_lrg | 0.67 | 60.0 | 4.87e-01 | 100.0% | 61.6% |
| 4347676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.67 | 56.0 | 5.20e-01 | 97.0% | 93.3% |
| 1035813 | 101.1.6.2 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_7 | 0.67 | 46.0 | 4.97e-01 | 79.1% | 92.3% |
| 4957054 | 101.1.2.743 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF28795 | 0.66 | 47.0 | 4.95e-01 | 74.6% | 100.0% |
| 2628410 | 101.1.1.86 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Raf1_HTH | 0.66 | 53.0 | 5.37e-01 | 95.5% | 89.4% |
| 3278077 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 53.0 | 5.51e-01 | 97.0% | 98.3% |
| 3409145 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.66 | 43.0 | 4.78e-01 | 74.6% | 90.0% |
| 4958364 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 56.0 | 5.03e-01 | 97.0% | 67.4% |
| 3904156 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 41.0 | 4.73e-01 | 70.1% | 95.6% |
| 4103318 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.66 | 56.0 | 4.56e-01 | 98.5% | 57.0% |
| 4965036 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.66 | 46.0 | 3.89e-01 | 74.6% | 62.6% |
| 5038587 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.65 | 45.0 | 4.71e-01 | 79.1% | 81.7% |
| 5055914 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 44.0 | 4.70e-01 | 79.1% | 87.3% |
| 4462818 | 101.1.2.71 ↗ | alpha arrays › HTH › HTH › winged helix domain › RuvB_C | 0.64 | 45.0 | 4.18e-01 | 74.6% | 73.9% |
| 3288926 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.64 | 49.0 | 3.86e-01 | 83.6% | 60.7% |
| 4962053 | 2008.1.1.108 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF234 | 0.64 | 46.0 | 3.19e-01 | 76.1% | 30.0% |
| 5038207 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 3.87e-01 | 77.6% | 49.2% |
| 3590732 | 101.1.1.364 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_49 | 0.64 | 41.0 | 4.67e-01 | 73.1% | 97.8% |
| 4968313 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.64 | 51.0 | 4.83e-01 | 91.0% | 72.5% |
| 5082351 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.64 | 44.0 | 4.21e-01 | 79.1% | 61.3% |
| 4928059 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.64 | 48.0 | 3.95e-01 | 83.6% | 63.8% |
| 5001395 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.58e-01 | 76.1% | 89.2% |
| 5018167 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.63 | 51.0 | 5.06e-01 | 91.0% | 82.9% |
| 5018467 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 49.0 | 4.48e-01 | 86.6% | 88.2% |
| 3907519 | 101.1.1.148 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › EPL1 | 0.63 | 50.0 | 3.91e-01 | 88.1% | 70.7% |
| 3941407 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.63 | 49.0 | 3.88e-01 | 85.1% | 64.1% |
| 3289818 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.63 | 48.0 | 3.87e-01 | 82.1% | 63.8% |
| 3255511 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.63 | 46.0 | 3.34e-01 | 77.6% | 40.0% |
| 3966282 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 3.88e-01 | 85.1% | 64.0% |
| 5045296 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 45.0 | 4.83e-01 | 77.6% | 94.5% |
| 5057214 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.62 | 44.0 | 4.02e-01 | 74.6% | 70.0% |
| 4961899 | 101.1.1.60 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 | 0.62 | 44.0 | 4.47e-01 | 79.1% | 76.9% |
| 5037318 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.62 | 44.0 | 4.20e-01 | 77.6% | 78.3% |
| 5074775 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.62 | 48.0 | 4.06e-01 | 86.6% | 91.5% |
| 3985011 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.62 | 47.0 | 3.77e-01 | 85.1% | 59.3% |
| 5019583 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 49.0 | 4.34e-01 | 88.1% | 77.0% |
| 5001366 | 182.1.2.1 ↗ | alpha complex topology › Cryptochrome/photolyase FAD-binding domain-related › Cryptochrome/photolyase FAD-binding domain-related › Fe-S cluster domain of DNA primase › DNA_primase_lrg | 0.62 | 53.0 | 4.00e-01 | 100.0% | 48.6% |
| 3509592 | 101.1.1.24 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CENP-B_N | 0.61 | 43.0 | 4.53e-01 | 77.6% | 85.0% |
| 4997858 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.61 | 51.0 | 3.83e-01 | 94.0% | 100.0% |
| 3943094 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.61 | 46.0 | 4.22e-01 | 85.1% | 90.3% |
| 4971290 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.60 | 51.0 | 4.33e-01 | 100.0% | 75.8% |
| 4245572 | 101.1.8.16 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › HTH_40 | 0.60 | 47.0 | 4.72e-01 | 88.1% | 82.9% |
| 4979047 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 49.0 | 3.76e-01 | 94.0% | 49.7% |
| 4942548 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 50.0 | 4.00e-01 | 100.0% | 60.0% |
| 5061884 | 101.1.2.887 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF1670 | 0.59 | 51.0 | 3.83e-01 | 94.0% | 53.8% |
| 5073460 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.59 | 45.0 | 4.16e-01 | 85.1% | 93.3% |
| 4938723 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.58 | 46.0 | 3.81e-01 | 89.6% | 66.9% |
| 5074870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.58 | 46.0 | 4.12e-01 | 88.1% | 92.0% |
| 3573678 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.58 | 47.0 | 3.54e-01 | 97.0% | 90.3% |
| 5013384 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.58 | 50.0 | 3.94e-01 | 100.0% | 56.0% |
| 4613072 | 101.1.2.721 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27113 | 0.57 | 51.0 | 3.84e-01 | 100.0% | 58.2% |
| 4956336 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.57 | 46.0 | 4.09e-01 | 92.5% | 77.0% |