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SRR1747065_scaffold_5_prodigal-single.1__X__X__00007
Bact-VirSRR1747065_scaffold_5_prodigal-single.1__X__X__00007
Identity
- Kingdom:
- phage
Quality
54.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-67
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.52 | 38.0 | 3.05e-01 | 92.3% | 36.8% |
| 4aw8A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 36.0 | 2.59e-01 | 73.8% | 35.5% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.50 | 39.0 | 3.42e-01 | 87.7% | 57.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3447558 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.62 | 46.0 | 3.61e-01 | 81.5% | 74.3% |
| 3826906 | 206.1.1.87 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, RIO1 | 0.58 | 40.0 | 2.66e-01 | 72.3% | 23.4% |
| 3883146 | 391.1.1.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module | 0.57 | 25.0 | 2.92e-01 | 76.9% | 51.1% |
| 3980689 | 4212.1.1.1 ↗ | beta barrels › FimD N-terminal domain-like › FimD N-terminal domain-like › FimD N-terminal domain-like › PapC_N | 0.54 | 37.0 | 3.11e-01 | 73.8% | 55.2% |
| 3010831 | 4967.1.1.14 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Flavi_NS5_thumb | 0.52 | 43.0 | 3.06e-01 | 93.8% | 82.9% |
| 3869235 | 2007.5.1.21 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C | 0.52 | 36.0 | 2.38e-01 | 83.1% | 15.0% |
D2
medium
residues 117-171
D3
medium
residues 172-227