←Back to structures
SRR1747065_scaffold_5_prodigal-single.1__X__X__00020
Bact-VirSRR1747065_scaffold_5_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 265-326
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n3fA01 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.76 | 51.0 | 5.85e-01 | 88.7% | 100.0% |
| 3hshE00 | 3.40.1620.70 | Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › | 0.75 | 52.0 | 5.46e-01 | 100.0% | 81.8% |
| 5by5A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 46.0 | 3.86e-01 | 82.3% | 52.2% |
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.61 | 49.0 | 3.65e-01 | 96.8% | 65.8% |
| 1b7eA01 | 3.90.350.10 | Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 | 0.59 | 48.0 | 3.24e-01 | 90.3% | 76.0% |
| 2h9fA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.57 | 47.0 | 3.46e-01 | 96.8% | 87.3% |
| 1yllC02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 42.0 | 3.64e-01 | 83.9% | 54.1% |
| 4oi4C01 | 2.60.120.1030 | Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain | 0.56 | 41.0 | 3.86e-01 | 83.9% | 65.5% |
| 1cseI00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.55 | 36.0 | 3.60e-01 | 79.0% | 65.1% |
| 1a10I00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.54 | 35.0 | 3.54e-01 | 82.3% | 65.1% |
| 1g2bA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.54 | 38.0 | 3.90e-01 | 75.8% | 88.7% |
| 3ttyA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 38.0 | 3.85e-01 | 80.6% | 91.9% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.51 | 38.0 | 2.83e-01 | 80.6% | 81.2% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1883379 | 1103.1.1.1 ↗ | mixed a+b and a/b › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › uncharacterized protein LPG2148 insertion domain › MvcA_ins | 0.68 | 44.0 | 3.93e-01 | 93.5% | 45.7% |
| 3923898 | 377.1.2.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger | 0.66 | 41.0 | 3.75e-01 | 93.5% | 47.5% |
| 4963110 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.66 | 54.0 | 3.87e-01 | 91.9% | 64.1% |
| 5038495 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.63 | 48.0 | 3.47e-01 | 87.1% | 62.5% |
| 3202902 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.61 | 52.0 | 4.68e-01 | 93.5% | 85.9% |
| 5014205 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.61 | 47.0 | 3.58e-01 | 90.3% | 71.3% |
| 3738584 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.58 | 49.0 | 4.56e-01 | 96.8% | 90.0% |
| 3459484 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.57 | 43.0 | 4.50e-01 | 90.3% | 90.9% |
| 3804854 | 376.1.2.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 | 0.56 | 42.0 | 3.45e-01 | 90.3% | 43.5% |
| 3972532 | 294.1.1.2 ↗ | a+b two layers › CI-2 family of serine protease inhibitors-like › CI-2 family of serine protease inhibitors › CI-2 family of serine protease inhibitors › Inhibitor_I78 | 0.56 | 35.0 | 3.53e-01 | 79.0% | 60.9% |
| 3209178 | 1143.1.1.0 ↗ | beta sandwiches › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit › beta sandwich domain in acetophenone carboxylase (Apc) alpha subunit | 0.56 | 44.0 | 4.31e-01 | 88.7% | 100.0% |
| 4011230 | 375.4.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like | 0.55 | 34.0 | 3.62e-01 | 93.5% | 74.0% |
| 4960540 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 39.0 | 3.91e-01 | 83.9% | 73.8% |
| 3394414 | 376.1.2.17 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET | 0.54 | 44.0 | 3.31e-01 | 88.7% | 76.4% |
| 3639307 | 375.1.1.275 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28755 | 0.54 | 37.0 | 3.47e-01 | 72.6% | 71.2% |
| None | — | 0.54 | 45.0 | 2.87e-01 | 91.9% | 19.3% | |
| 4438753 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.53 | 46.0 | 3.02e-01 | 96.8% | 49.3% |
| 4967062 | 2008.1.1.222 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NotI | 0.52 | 38.0 | 2.79e-01 | 85.5% | 63.1% |
| 3633930 | 376.1.2.26 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › PF28755 | 0.52 | 35.0 | 3.27e-01 | 72.6% | 72.9% |
| 4451770 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.52 | 40.0 | 2.96e-01 | 85.5% | 44.8% |
| 4948622 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.50 | 40.0 | 2.89e-01 | 98.4% | 47.0% |
| 5029815 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.50 | 41.0 | 2.91e-01 | 93.5% | 34.4% |