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SRR1747065_scaffold_5_prodigal-single.1__X__X__00055
Bact-VirSRR1747065_scaffold_5_prodigal-single.1__X__X__00055
Identity
- Kingdom:
- phage
Quality
73.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 49-115
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.62 | 44.0 | 3.57e-01 | 95.5% | 37.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.62 | 45.0 | 3.92e-01 | 98.5% | 52.0% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 45.0 | 3.43e-01 | 97.0% | 33.3% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.59 | 41.0 | 2.84e-01 | 92.5% | 20.7% |
| 1pbyB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 2.97e-01 | 94.0% | 22.3% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 3.04e-01 | 100.0% | 34.0% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.54 | 45.0 | 3.45e-01 | 95.5% | 72.3% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.54 | 45.0 | 3.66e-01 | 97.0% | 48.4% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.54 | 33.0 | 3.33e-01 | 80.6% | 60.0% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 3.55e-01 | 100.0% | 75.2% |
| 2n3gA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 41.0 | 4.05e-01 | 100.0% | 80.6% |
| 1j3mA00 | 3.30.310.70 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain | 0.53 | 35.0 | 2.95e-01 | 77.6% | 36.2% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.53 | 41.0 | 3.50e-01 | 83.6% | 68.5% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 42.0 | 4.23e-01 | 100.0% | 87.3% |
| 1a90A00 | 3.10.450.10 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 40.0 | 3.43e-01 | 82.1% | 99.1% |
| 4n30A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.28e-01 | 97.0% | 89.0% |
| 2dt8A02 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.53 | 44.0 | 3.52e-01 | 97.0% | 46.9% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.52 | 41.0 | 3.78e-01 | 100.0% | 65.6% |
| 3lqmA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.47e-01 | 83.6% | 61.8% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.51 | 44.0 | 3.48e-01 | 100.0% | 54.7% |
| 2w35A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 43.0 | 3.03e-01 | 95.5% | 30.9% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.51 | 39.0 | 3.22e-01 | 83.6% | 69.1% |
| 2gvhC01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 37.0 | 3.01e-01 | 80.6% | 68.4% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4945072 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.69 | 59.0 | 3.91e-01 | 97.0% | 27.1% |
| 3612635 | 214.1.1.0 ↗ | a+b two layers › SH2 › SH2 › SH2 | 0.68 | 49.0 | 4.00e-01 | 77.6% | 40.8% |
| 3962269 | 2004.1.1.204 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.66 | 54.0 | 3.30e-01 | 91.0% | 20.0% |
| 3519907 | 3333.1.1.1 ↗ | a+b two layers › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › Barrel domain in dedicator of cytokinesis protein 9 › DHR-2_Lobe_B | 0.63 | 46.0 | 3.57e-01 | 82.1% | 55.2% |
| 4934684 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.61 | 51.0 | 4.21e-01 | 98.5% | 51.7% |
| 3456246 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.61 | 52.0 | 4.78e-01 | 100.0% | 74.4% |
| None | — | 0.60 | 52.0 | 3.45e-01 | 98.5% | 37.2% | |
| 4992937 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.60 | 50.0 | 3.23e-01 | 97.0% | 21.2% |
| 4965032 | 375.1.1.343 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7835 | 0.60 | 43.0 | 4.66e-01 | 82.1% | 94.5% |
| 4304368 | 5.1.4.16 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A | 0.58 | 50.0 | 3.17e-01 | 100.0% | 30.3% |
| 4955652 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 49.0 | 3.16e-01 | 98.5% | 27.3% |
| 3354455 | 5.1.11.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RAB3GAP2_N | 0.58 | 44.0 | 2.73e-01 | 83.6% | 17.5% |
| 3281114 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.57 | 49.0 | 3.97e-01 | 100.0% | 83.6% |
| 3596299 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 50.0 | 4.35e-01 | 100.0% | 81.0% |
| 3601626 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.57 | 44.0 | 3.58e-01 | 86.6% | 42.1% |
| 3228051 | 295.1.1.3 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA | 0.57 | 39.0 | 4.01e-01 | 86.6% | 75.4% |
| 4586139 | 2484.1.1.146 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_Tn3 | 0.57 | 47.0 | 3.04e-01 | 97.0% | 20.3% |
| 3196041 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.56 | 49.0 | 3.06e-01 | 100.0% | 24.6% |
| 3245175 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.56 | 43.0 | 3.92e-01 | 100.0% | 61.1% |
| 3509891 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.55 | 48.0 | 3.07e-01 | 100.0% | 21.7% |
| 3861070 | 4292.2.1.2 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B | 0.55 | 48.0 | 4.13e-01 | 100.0% | 74.5% |
| 3484523 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.55 | 47.0 | 3.11e-01 | 100.0% | 35.9% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 46.0 | 4.03e-01 | 100.0% | 62.7% |
| 3646552 | 252.1.1.0 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD | 0.54 | 46.0 | 4.49e-01 | 98.5% | 86.7% |
| 3548278 | 2484.1.1.104 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 | 0.54 | 44.0 | 3.21e-01 | 97.0% | 41.4% |
| 3989984 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.54 | 46.0 | 3.78e-01 | 97.0% | 55.2% |
| 3438347 | 5.1.5.63 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 | 0.54 | 42.0 | 3.38e-01 | 88.1% | 47.1% |
| 4027702 | 6127.1.1.1 ↗ | beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › CIDR1_gamma | 0.53 | 40.0 | 4.01e-01 | 82.1% | 85.7% |
| 5028953 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.53 | 42.0 | 3.87e-01 | 100.0% | 65.6% |
| 3477257 | 5.1.4.148 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR93 | 0.53 | 45.0 | 2.71e-01 | 100.0% | 17.2% |
| 3409973 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.52 | 41.0 | 4.01e-01 | 100.0% | 78.7% |
| 4984571 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.52 | 43.0 | 3.24e-01 | 94.0% | 67.2% |
| 3554889 | 5.1.3.251 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF28327 | 0.52 | 45.0 | 2.88e-01 | 100.0% | 20.6% |
| 3507785 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.51 | 35.0 | 3.33e-01 | 82.1% | 57.6% |
| 3386467 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.51 | 43.0 | 3.44e-01 | 100.0% | 72.0% |
| 2593098 | 304.139.2.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7f/Csy3 › Cas_Csy3 | 0.51 | 43.0 | 2.80e-01 | 97.0% | 61.4% |
| 4364336 | 375.1.1.21 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 | 0.51 | 34.0 | 3.67e-01 | 83.6% | 85.5% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.51 | 41.0 | 3.83e-01 | 100.0% | 68.9% |
| 3399617 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.51 | 34.0 | 3.16e-01 | 77.6% | 52.2% |
| 3243872 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.51 | 43.0 | 2.90e-01 | 97.0% | 23.6% |
| 5066490 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.51 | 37.0 | 3.36e-01 | 77.6% | 75.6% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.51 | 42.0 | 3.09e-01 | 98.5% | 80.0% |
| 3595729 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.50 | 36.0 | 3.42e-01 | 82.1% | 63.7% |
| 4189579 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.50 | 42.0 | 3.64e-01 | 100.0% | 99.1% |
| 4039230 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 40.0 | 3.94e-01 | 100.0% | 84.0% |