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SRR1747065_scaffold_5_prodigal-single.1__X__X__00080

Bact-Vir

SRR1747065_scaffold_5_prodigal-single.1__X__X__00080

Identity

Kingdom:
phage

Quality

64.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-86
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.81 49.0 5.26e-01 100.0% 70.2%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.78 71.0 6.48e-01 100.0% 79.8%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.77 70.0 6.50e-01 100.0% 97.6%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 64.0 6.40e-01 100.0% 88.1%
2awnC02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.72 60.0 5.66e-01 100.0% 75.6%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 63.0 6.05e-01 100.0% 85.1%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.71 52.0 5.12e-01 86.2% 71.8%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.71 64.0 6.09e-01 100.0% 92.0%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.71 44.0 4.20e-01 100.0% 53.9%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 49.0 5.55e-01 81.5% 98.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 43.0 3.43e-01 100.0% 33.6%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 60.0 6.03e-01 100.0% 100.0%
1x6oA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 5.63e-01 100.0% 91.1%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 60.0 5.71e-01 100.0% 92.0%
1jb7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 60.0 4.93e-01 100.0% 62.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.66 53.0 5.33e-01 89.2% 86.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 47.0 4.92e-01 100.0% 91.4%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 38.0 3.56e-01 81.5% 50.0%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 39.0 4.12e-01 84.6% 73.2%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 52.0 4.76e-01 98.5% 77.5%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 47.0 4.14e-01 92.3% 95.2%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.58 35.0 2.11e-01 96.9% 8.6%
2hczX02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.57 42.0 3.68e-01 81.5% 90.4%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 39.0 2.94e-01 76.9% 71.2%
1y4uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.55 39.0 2.85e-01 76.9% 78.9%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 43.0 3.58e-01 93.8% 89.2%
2ichA02 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.53 45.0 3.73e-01 100.0% 85.4%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 47.0 3.74e-01 100.0% 87.3%
5gvyA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.53 45.0 3.55e-01 98.5% 97.2%
7bwcA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 39.0 2.56e-01 92.3% 17.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 38.0 2.38e-01 80.0% 64.0%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.12e-01 75.4% 52.8%
1kczA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 38.0 2.98e-01 84.6% 89.6%
1f0cA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 41.0 3.45e-01 92.3% 68.6%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.23e-01 100.0% 51.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 36.0 3.68e-01 100.0% 80.6%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980538 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.82 75.0 7.11e-01 100.0% 92.0%
3953859 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 68.0 6.85e-01 98.5% 92.3%
3962096 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 68.0 5.24e-01 98.5% 44.4%
3619972 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 69.0 6.72e-01 100.0% 94.3%
5039702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 48.0 5.58e-01 81.5% 97.8%
3889659 2.1.1.188 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 0.74 66.0 5.91e-01 100.0% 91.1%
3970949 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 56.0 4.60e-01 90.8% 46.1%
3968675 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 63.0 4.99e-01 98.5% 47.7%
4451633 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.73 65.0 5.16e-01 100.0% 96.2%
4119295 2.1.1.83 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.72 66.0 5.99e-01 100.0% 81.2%
4281449 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.72 56.0 4.43e-01 89.2% 42.2%
4079201 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 53.0 4.40e-01 90.8% 46.4%
4236717 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 65.0 5.23e-01 100.0% 99.2%
4594302 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 56.0 4.66e-01 90.8% 48.7%
4165211 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 63.0 4.86e-01 100.0% 97.9%
5065013 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 57.0 4.24e-01 90.8% 35.6%
3967128 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 55.0 5.44e-01 90.8% 78.6%
4944219 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 55.0 4.44e-01 89.2% 44.8%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 63.0 5.09e-01 100.0% 98.3%
3988828 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 55.0 4.48e-01 89.2% 46.7%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 63.0 4.88e-01 100.0% 89.6%
4998346 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.69 55.0 4.35e-01 89.2% 43.1%
4646663 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 56.0 4.42e-01 89.2% 43.0%
4346153 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 62.0 4.84e-01 100.0% 97.0%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 55.0 4.49e-01 89.2% 47.5%
4235194 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 54.0 4.37e-01 89.2% 44.8%
3320905 2.1.1.265 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_RRP5 0.68 61.0 5.28e-01 100.0% 72.0%
4236900 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 55.0 4.40e-01 89.2% 45.7%
4366434 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 51.0 5.03e-01 89.2% 75.7%
3244964 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.31e-01 100.0% 74.4%
3214896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 58.0 4.94e-01 100.0% 60.0%
4623446 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 54.0 4.34e-01 89.2% 46.8%
4234366 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 54.0 4.38e-01 90.8% 47.2%
5032554 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 59.0 4.70e-01 100.0% 92.8%
3970503 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 53.0 4.23e-01 90.8% 45.0%
3973121 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 53.0 4.27e-01 90.8% 46.1%
4309833 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 53.0 4.27e-01 90.8% 46.1%
5080202 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 58.0 4.65e-01 100.0% 92.8%
3941442 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 52.0 4.21e-01 90.8% 46.1%
4426470 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 55.0 5.39e-01 100.0% 92.9%
4625348 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.63 47.0 4.91e-01 100.0% 88.3%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.63 49.0 4.18e-01 89.2% 50.9%
4984320 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 57.0 4.50e-01 100.0% 92.3%
3975926 2.4.1.17 beta barrels › OB-fold › MOP-like › MOP-like › DUF7765 0.63 57.0 5.16e-01 100.0% 76.5%
3673266 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 47.0 4.35e-01 81.5% 62.4%
4492087 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.62 47.0 4.71e-01 100.0% 81.5%
4504508 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.61 46.0 4.21e-01 100.0% 61.2%
4932378 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 4.39e-01 93.8% 78.3%
3255830 2.1.1.24 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CcmE 0.60 51.0 4.52e-01 100.0% 70.0%
4595815 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.59 43.0 4.32e-01 95.4% 78.5%
4099964 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.59 43.0 4.31e-01 95.4% 78.5%
5065719 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.59 50.0 4.50e-01 96.9% 81.1%
4129953 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.58 42.0 4.23e-01 95.4% 78.5%
4183857 325.1.7.30 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.57 42.0 4.07e-01 100.0% 69.3%
4211209 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 40.0 4.10e-01 95.4% 76.9%
4489443 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 43.0 3.75e-01 89.2% 89.1%
4966133 2.1.1.377 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF25948 0.55 47.0 3.43e-01 100.0% 33.5%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.55 37.0 3.01e-01 83.1% 34.6%
4427430 2.1.1.323 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27399 0.55 48.0 4.29e-01 100.0% 74.7%
4119875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 40.0 4.01e-01 100.0% 80.0%
3969569 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 39.0 4.07e-01 100.0% 86.7%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.54 43.0 4.25e-01 90.8% 95.6%
4072334 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 42.0 3.74e-01 89.2% 97.0%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 36.0 3.28e-01 83.1% 50.0%
4426619 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 41.0 3.72e-01 87.7% 97.9%
4107506 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 38.0 3.87e-01 100.0% 80.0%
4456732 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 39.0 3.73e-01 100.0% 67.5%
4349950 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.96e-01 100.0% 88.3%
4068978 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.71e-01 100.0% 70.7%
3165403 4958.1.1.0 a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit 0.52 37.0 3.73e-01 95.4% 76.9%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.52 40.0 3.68e-01 87.7% 90.0%
4159666 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.30e-01 100.0% 48.6%
4077485 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.83e-01 100.0% 83.1%
4065841 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.51 39.0 3.60e-01 89.2% 91.6%
4127839 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 37.0 3.62e-01 100.0% 70.7%
3673700 76.1.1.2 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.51 44.0 3.39e-01 98.5% 94.7%