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SRR1747065_scaffold_5_prodigal-single.1__X__X__00095
Bact-VirSRR1747065_scaffold_5_prodigal-single.1__X__X__00095
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-148
Domain cluster:
rep: NC_073317.1__YP_010749072.1__QCF72_gp16__00016__D4-119
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3qzqA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.73 | 38.0 | 5.10e-01 | 87.7% | 95.7% |
| 3gs9A01 | 6.20.110.10 | Special › Other non-globular › Thrombin, subunit H › | 0.73 | 44.0 | 5.57e-01 | 86.2% | 100.0% |
| 2kcaA00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.66 | 50.0 | 5.44e-01 | 91.5% | 95.4% |
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.65 | 52.0 | 5.58e-01 | 90.0% | 95.7% |
| 1agjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 41.0 | 4.44e-01 | 88.5% | 78.7% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 40.0 | 4.27e-01 | 92.3% | 77.5% |
| 5c94A00 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.60 | 37.0 | 3.97e-01 | 87.7% | 69.8% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.59 | 41.0 | 4.55e-01 | 92.3% | 90.4% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 29.0 | 3.62e-01 | 91.5% | 78.2% |
| 4qnyA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.57 | 34.0 | 3.60e-01 | 87.7% | 65.5% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 29.0 | 3.37e-01 | 81.5% | 68.5% |
| 1g3pA02 | 3.90.450.1 | Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 | 0.55 | 37.0 | 4.07e-01 | 82.3% | 85.6% |
| 3bpkA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 49.0 | 4.35e-01 | 95.4% | 77.1% |
| 1qzzA03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 33.0 | 3.01e-01 | 89.2% | 45.0% |
| 1svvB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 30.0 | 3.52e-01 | 98.5% | 75.0% |
| 2jzxA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.52 | 27.0 | 3.34e-01 | 98.5% | 81.0% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 27.0 | 3.22e-01 | 75.4% | 77.6% |
| 4qu7A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 27.0 | 3.29e-01 | 78.5% | 81.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4669352 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.79 | 58.0 | 6.28e-01 | 90.8% | 89.1% |
| 5038876 | 1.1.13.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach | 0.73 | 49.0 | 5.87e-01 | 86.9% | 98.9% |
| 5003311 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.73 | 59.0 | 6.42e-01 | 88.5% | 99.1% |
| 3968432 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 45.0 | 4.98e-01 | 91.5% | 78.1% |
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.71 | 49.0 | 5.71e-01 | 89.2% | 98.9% |
| 3943285 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.68 | 55.0 | 5.99e-01 | 89.2% | 100.0% |
| 4342567 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.68 | 44.0 | 4.67e-01 | 92.3% | 73.9% |
| 169594 | 1.1.13.14 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 | 0.65 | 52.0 | 5.58e-01 | 90.0% | 95.7% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.64 | 42.0 | 4.52e-01 | 92.3% | 76.5% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.64 | 44.0 | 4.48e-01 | 92.3% | 72.8% |
| 4551243 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.63 | 43.0 | 4.38e-01 | 92.3% | 72.0% |
| 3789214 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.63 | 39.0 | 4.25e-01 | 86.2% | 76.2% |
| 3943282 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.62 | 42.0 | 4.43e-01 | 92.3% | 75.8% |
| 4217523 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 42.0 | 4.31e-01 | 92.3% | 73.6% |
| 4562905 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 41.0 | 4.20e-01 | 90.0% | 72.0% |
| 4036849 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.60 | 43.0 | 4.35e-01 | 94.6% | 72.9% |
| 3622133 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 42.0 | 3.41e-01 | 83.1% | 39.6% |
| 4259247 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.58 | 39.0 | 4.43e-01 | 92.3% | 91.9% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.57 | 40.0 | 3.98e-01 | 91.5% | 67.1% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 40.0 | 4.02e-01 | 92.3% | 73.1% |
| 3595114 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 36.0 | 3.97e-01 | 86.2% | 80.0% |
| 4940409 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.56 | 28.0 | 3.43e-01 | 73.8% | 76.2% |
| 4260208 | 1.1.13.62 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 | 0.55 | 42.0 | 4.72e-01 | 84.6% | 100.0% |
| 4096792 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.55 | 48.0 | 4.13e-01 | 95.4% | 69.8% |
| 4316814 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 28.0 | 3.25e-01 | 80.0% | 67.0% |
| 4300476 | 304.102.1.4 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N | 0.53 | 37.0 | 3.15e-01 | 83.1% | 42.2% |
| 4373808 | 1.11.1.1 ↗ | beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 | 0.53 | 40.0 | 4.32e-01 | 97.7% | 94.5% |
| 3554956 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.52 | 28.0 | 3.12e-01 | 83.1% | 63.8% |
| 5035326 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.52 | 28.0 | 3.25e-01 | 75.4% | 73.3% |
| 3512169 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 28.0 | 3.25e-01 | 80.8% | 73.3% |
| 3942090 | 1.1.5.77 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube | 0.51 | 44.0 | 4.09e-01 | 92.3% | 87.9% |