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SRR1747065_scaffold_9_prodigal-single.1__X__X__00002

Bact-Vir

SRR1747065_scaffold_9_prodigal-single.1__X__X__00002

Identity

Kingdom:
phage

Quality

52.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-138
PDB
D2 medium residues 229-382
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 94.3 7.80e-27 80.5% 89.0%
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fs7A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.90 87.0 6.23e-01 100.0% 43.1%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.89 86.0 6.18e-01 100.0% 42.2%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.86 68.0 7.15e-01 81.8% 95.8%
4fd0A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.85 82.0 6.31e-01 100.0% 51.3%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.85 81.0 5.74e-01 100.0% 44.9%
4h09D00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.83 79.0 5.75e-01 100.0% 48.0%
3sb4A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.74 64.0 6.50e-01 96.8% 92.2%
3o53A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 65.0 5.13e-01 100.0% 57.6%
1xwdC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.70 64.0 5.53e-01 100.0% 71.1%
2xwtC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.70 64.0 5.59e-01 100.0% 75.6%
1h6uA02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.68 62.0 6.15e-01 100.0% 94.4%
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.68 59.0 5.59e-01 92.2% 95.5%
2id5A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.66 61.0 4.58e-01 100.0% 56.2%
4b3hB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 47.0 3.73e-01 91.6% 81.9%
1j7xA02 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 44.0 3.96e-01 84.4% 81.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1281087 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.90 87.0 6.23e-01 100.0% 43.1%
2576217 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.89 84.0 7.38e-01 98.7% 73.4%
1297113 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.86 68.0 7.13e-01 81.8% 95.1%
1281127 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.86 80.0 7.77e-01 98.1% 96.4%
5033803 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.86 82.0 7.09e-01 100.0% 82.7%
1600195 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 81.0 7.21e-01 100.0% 74.5%
1501314 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 81.0 5.74e-01 100.0% 44.9%
1295939 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.83 79.0 5.75e-01 100.0% 48.0%
3613454 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.74 69.0 5.86e-01 100.0% 75.1%
3421119 207.1.1.103 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.73 68.0 5.51e-01 100.0% 67.3%
3316459 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 65.0 5.03e-01 100.0% 53.6%
3647158 207.1.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.70 65.0 6.40e-01 100.0% 97.6%
3533235 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.70 65.0 5.29e-01 99.4% 73.8%
3405595 207.1.1.24 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.70 65.0 5.03e-01 100.0% 66.2%
3938758 207.1.1.132 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 0.70 64.0 4.34e-01 100.0% 34.6%
3524919 207.1.1.130 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 0.69 63.0 5.48e-01 100.0% 87.2%
3174454 5086.1.1.121 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Hyphal_reg_CWP 0.69 63.0 5.34e-01 100.0% 84.4%
3251577 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.67 61.0 4.90e-01 100.0% 80.3%
3271552 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.65 59.0 4.46e-01 100.0% 53.8%
4108875 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.53 45.0 3.98e-01 94.8% 91.5%
D3 medium residues 383-518
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 47.5 2.30e-12 75.7% 78.0%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.85 76.0 5.25e-01 93.4% 33.1%
4fs7A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.80 70.0 4.94e-01 92.6% 33.4%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.77 73.0 5.14e-01 100.0% 43.5%
4h09D00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.76 71.0 5.06e-01 100.0% 40.1%
4fd0A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.75 71.0 5.31e-01 100.0% 57.9%
1xwdC00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.74 68.0 5.57e-01 99.3% 71.5%
3sb4A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.73 65.0 5.90e-01 94.9% 93.2%
3sb4A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 60.0 5.84e-01 91.9% 92.2%
2id5A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 64.0 4.68e-01 100.0% 41.8%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.69 61.0 6.00e-01 91.9% 90.1%
4hq1A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.68 60.0 4.69e-01 97.1% 53.4%
4xsqB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.67 56.0 5.08e-01 89.0% 83.2%
3ozoA02 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.53 44.0 3.26e-01 92.6% 66.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1501314 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 76.0 5.25e-01 93.4% 33.1%
1600195 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.79 69.0 5.85e-01 90.4% 64.9%
3251672 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.75 59.0 6.34e-01 81.6% 100.0%
3429740 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.73 63.0 5.67e-01 91.9% 96.2%
3464748 207.1.1.97 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 0.73 66.0 4.27e-01 99.3% 28.6%
3248620 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.72 64.0 4.71e-01 95.6% 56.0%
3339346 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.72 66.0 5.26e-01 100.0% 62.0%
3273833 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.71 65.0 4.77e-01 99.3% 42.3%
3249567 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.70 62.0 3.97e-01 95.6% 26.3%
3467508 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.70 64.0 4.19e-01 100.0% 38.3%
3260493 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.70 64.0 4.21e-01 99.3% 27.3%
3275515 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.70 63.0 4.33e-01 97.8% 37.4%
3385299 207.1.1.103 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_R13L1-DRL21 0.70 63.0 3.98e-01 100.0% 21.0%
3264119 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.70 63.0 4.62e-01 97.8% 47.7%
3249993 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 4.12e-01 99.3% 28.4%
3249992 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 5.19e-01 99.3% 66.5%
3251864 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 4.32e-01 99.3% 35.1%
3262791 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 4.43e-01 97.8% 49.6%
3401350 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.69 63.0 5.10e-01 100.0% 73.3%
3276920 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 3.95e-01 99.3% 31.4%
3251621 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 62.0 5.30e-01 97.1% 73.6%
3904491 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.69 54.0 4.68e-01 82.4% 69.8%
3248554 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 62.0 4.26e-01 99.3% 29.4%
3260978 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.69 63.0 4.90e-01 100.0% 50.3%
3276722 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.68 61.0 4.65e-01 99.3% 62.2%
3253757 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.68 62.0 5.16e-01 99.3% 70.6%
3275613 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.68 62.0 4.64e-01 100.0% 42.4%
3253273 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.68 60.0 4.70e-01 96.3% 60.0%
3435435 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 59.0 4.24e-01 95.6% 48.9%
4851734 2004.1.1.565 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LRR_1, LRR_8 0.68 61.0 5.67e-01 97.1% 91.6%
3666583 207.1.1.97 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 0.68 61.0 4.59e-01 100.0% 57.1%
3302636 207.1.1.97 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_RPS2 0.67 61.0 3.98e-01 100.0% 40.5%
3272049 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.67 61.0 4.82e-01 100.0% 52.7%
3264477 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.67 61.0 4.07e-01 99.3% 26.7%
3267761 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.66 59.0 3.98e-01 98.5% 26.7%
3271178 207.1.1.12 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FNIP 0.64 55.0 4.52e-01 96.3% 63.7%
3463195 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.63 57.0 4.60e-01 100.0% 61.0%
3249386 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.61 54.0 4.72e-01 97.1% 74.5%
4075147 2003.1.12.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › UDPG/MGDP dehydrogenase C-terminal domain › UDPG_MGDP_dh_C 0.51 37.0 3.51e-01 76.5% 77.6%
D4 medium residues 602-696
PDB
D5 medium residues 697-763_777-800
PDB
D6 medium residues 834-966
PDB