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SRR1747065_scaffold_9_prodigal-single.1__X__X__00088

Bact-Vir

SRR1747065_scaffold_9_prodigal-single.1__X__X__00088

Identity

Kingdom:
phage

Quality

55.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 210-316
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.84 52.0 6.09e-01 100.0% 88.2%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.74 54.0 5.84e-01 100.0% 89.0%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 55.0 5.67e-01 98.1% 82.5%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 39.0 2.70e-01 99.1% 16.8%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 59.0 5.82e-01 100.0% 82.5%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.72 49.0 5.17e-01 100.0% 78.9%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.70 48.0 5.51e-01 100.0% 96.2%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 37.0 4.74e-01 95.3% 88.9%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 48.0 4.46e-01 100.0% 57.0%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 63.0 6.10e-01 100.0% 95.7%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.68 49.0 4.78e-01 100.0% 67.5%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 39.0 4.58e-01 88.8% 82.4%
4r1kB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 60.0 5.54e-01 100.0% 84.6%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 57.0 5.47e-01 100.0% 96.8%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 4.81e-01 100.0% 82.0%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 5.11e-01 100.0% 75.2%
4gb5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 55.0 4.97e-01 100.0% 86.5%
3en8A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 55.0 5.45e-01 100.0% 92.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.62 33.0 4.40e-01 89.7% 96.6%
2owpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 56.0 5.28e-01 100.0% 86.0%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 38.0 3.24e-01 100.0% 39.8%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 5.18e-01 100.0% 87.8%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 54.0 5.43e-01 100.0% 96.3%
3f8xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 55.0 5.10e-01 100.0% 79.5%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 42.0 3.50e-01 100.0% 41.8%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 54.0 4.66e-01 100.0% 85.6%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 53.0 5.18e-01 100.0% 96.7%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 39.0 3.45e-01 100.0% 44.4%
3nv0B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 53.0 4.92e-01 100.0% 84.6%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 41.0 3.61e-01 100.0% 47.6%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.57 47.0 3.75e-01 88.8% 78.8%
1uliB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 50.0 4.29e-01 100.0% 81.4%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 45.0 3.25e-01 83.2% 68.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 39.0 3.52e-01 86.0% 52.1%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 51.0 4.96e-01 96.3% 97.4%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 49.0 4.69e-01 100.0% 92.2%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.55 50.0 4.11e-01 100.0% 66.0%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.54 41.0 4.15e-01 100.0% 80.2%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.54 49.0 4.09e-01 100.0% 67.8%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 37.0 3.46e-01 100.0% 57.3%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.53 42.0 3.60e-01 86.0% 90.6%
1sr4B00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 40.0 3.01e-01 92.5% 32.6%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.52e-01 84.1% 54.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.52 38.0 4.00e-01 100.0% 87.2%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.52 43.0 3.54e-01 91.6% 99.5%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.52 45.0 3.65e-01 92.5% 56.4%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 4.00e-01 85.0% 94.0%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.51 39.0 4.02e-01 90.7% 82.7%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 45.0 3.33e-01 100.0% 40.3%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.51 45.0 4.21e-01 100.0% 86.8%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.50 41.0 2.74e-01 88.8% 95.1%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.50 42.0 3.43e-01 89.7% 60.2%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3841163 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.78 47.0 5.07e-01 90.7% 71.1%
4648747 243.3.1.8 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.74 51.0 5.90e-01 100.0% 100.0%
5023738 11.1.1.1443 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.73 50.0 5.02e-01 92.5% 69.1%
3805100 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.72 48.0 3.95e-01 100.0% 38.8%
3288112 243.1.1.69 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF6459 0.71 62.0 6.22e-01 100.0% 94.5%
3508903 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.68 54.0 5.44e-01 100.0% 84.8%
3587998 243.1.1.102 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF28180 0.68 59.0 6.01e-01 100.0% 96.2%
6421 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.68 48.0 4.68e-01 100.0% 66.4%
3212332 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.68 62.0 5.84e-01 100.0% 90.8%
3833801 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.67 48.0 5.44e-01 100.0% 98.8%
None 0.66 60.0 5.83e-01 100.0% 95.0%
3622582 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.66 50.0 4.93e-01 100.0% 73.9%
4977517 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.65 35.0 4.13e-01 98.1% 74.7%
3282696 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.65 54.0 5.59e-01 99.1% 97.0%
3742742 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.64 44.0 4.36e-01 71.0% 67.8%
3731497 243.1.1.78 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26534 0.64 59.0 5.27e-01 100.0% 82.1%
3423528 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.64 44.0 3.82e-01 71.0% 74.5%
4119121 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.63 51.0 5.26e-01 100.0% 92.9%
3319754 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.63 44.0 3.86e-01 72.0% 75.6%
3828738 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.63 57.0 5.03e-01 100.0% 78.7%
4930408 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 54.0 5.56e-01 98.1% 100.0%
3519929 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.63 56.0 5.31e-01 100.0% 87.7%
3203022 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.63 56.0 5.24e-01 100.0% 92.6%
4928725 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.62 57.0 5.47e-01 100.0% 97.5%
3393289 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.62 58.0 3.77e-01 100.0% 32.0%
2644388 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 57.0 5.37e-01 100.0% 83.1%
5059048 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.61 55.0 5.30e-01 100.0% 95.9%
4956007 264.2.1.0 beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 42.0 4.23e-01 90.7% 70.5%
3221974 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 52.0 5.31e-01 100.0% 96.2%
4664932 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.61 51.0 4.91e-01 100.0% 80.0%
4950139 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.61 54.0 5.14e-01 100.0% 94.4%
4022303 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 53.0 4.82e-01 100.0% 78.7%
3386770 243.1.1.8 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MlaC 0.60 53.0 4.66e-01 99.1% 80.6%
3843014 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 4.62e-01 100.0% 81.9%
6391 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.60 53.0 5.14e-01 100.0% 95.9%
4946877 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 54.0 3.76e-01 99.1% 34.4%
3522631 243.3.1.28 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Spp-24 0.59 50.0 4.91e-01 100.0% 85.2%
4884000 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.59 52.0 4.59e-01 96.3% 89.1%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.59 52.0 4.92e-01 100.0% 83.5%
4436162 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.58 52.0 4.92e-01 100.0% 83.1%
4021772 298.1.1.0 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.58 40.0 3.56e-01 100.0% 49.0%
1388524 243.17.1.1 a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C 0.58 47.0 4.45e-01 87.9% 76.9%
4582733 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 51.0 4.86e-01 100.0% 87.7%
4026812 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 40.0 3.47e-01 86.0% 47.5%
4957500 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.57 36.0 3.78e-01 97.2% 69.5%
5050502 243.18.1.0 a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain 0.57 52.0 4.64e-01 100.0% 81.3%
4873984 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.57 40.0 3.63e-01 85.0% 53.4%
3832653 331.3.1.1 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Bet_v_1 0.57 39.0 3.42e-01 85.0% 48.4%
1064199 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.56 50.0 4.88e-01 100.0% 94.2%
4977218 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 47.0 3.28e-01 90.7% 33.6%
4176400 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 33.0 3.83e-01 81.3% 82.7%
3409664 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.55 51.0 3.38e-01 100.0% 32.2%
5055280 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.55 38.0 3.43e-01 100.0% 51.7%
4976921 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 51.0 3.51e-01 99.1% 34.9%
3397726 206.1.1.55 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › EcKL 0.55 50.0 3.32e-01 100.0% 31.3%
3937921 5.1.3.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_IFT140_2nd 0.54 44.0 3.07e-01 100.0% 27.9%
3690650 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.54 36.0 3.42e-01 76.6% 54.8%
5011932 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.54 38.0 3.92e-01 96.3% 77.1%
5077103 5.1.11.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › PQQ_2 0.54 48.0 3.17e-01 100.0% 23.7%
4209794 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.53 45.0 3.64e-01 94.4% 90.2%
4983274 868.1.1.1 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH 0.51 38.0 3.23e-01 88.8% 46.9%
3602312 325.1.6.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PS_Dcarbxylase 0.50 40.0 3.44e-01 86.0% 85.1%
D2 medium residues 91-109_150-207
PDB