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SRR1747065_scaffold_9_prodigal-single.1__X__X__00111
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00111
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 162-256
Domain cluster:
rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00426__D137-218
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxT01 | 2.30.30.70 | Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 | 0.69 | 44.0 | 4.37e-01 | 100.0% | 62.9% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 43.0 | 5.07e-01 | 100.0% | 89.7% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 38.0 | 4.29e-01 | 95.8% | 88.9% |
| 3havA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.56 | 38.0 | 3.99e-01 | 93.7% | 76.4% |
| 2r55A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 38.0 | 3.03e-01 | 75.8% | 76.0% |
| 2xvlA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.52 | 44.0 | 3.41e-01 | 96.8% | 83.3% |
| 2pa8D01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 35.0 | 3.63e-01 | 72.6% | 75.0% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.51 | 38.0 | 3.74e-01 | 78.9% | 75.5% |
| 8fd9A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 36.0 | 3.89e-01 | 90.5% | 90.9% |
| 5cenA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.72e-01 | 93.7% | 87.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4496745 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.57 | 39.0 | 4.00e-01 | 70.5% | 98.9% |
| 4123369 | 4.1.1.252 ↗ | beta barrels › SH3 › SH3 › SH3 › MdcG_N | 0.57 | 42.0 | 4.31e-01 | 100.0% | 82.2% |
| 4932565 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.55 | 38.0 | 3.96e-01 | 72.6% | 82.2% |
| 5041140 | 217.2.1.1 ↗ | a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC | 0.54 | 37.0 | 3.82e-01 | 70.5% | 94.4% |
| 3798234 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.54 | 40.0 | 3.97e-01 | 78.9% | 78.0% |
| 3628199 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.54 | 40.0 | 3.96e-01 | 78.9% | 78.0% |
| 5051686 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.52 | 42.0 | 3.78e-01 | 87.4% | 85.8% |
| 3455665 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.51 | 39.0 | 2.69e-01 | 97.9% | 22.0% |
| 5044537 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.51 | 38.0 | 4.07e-01 | 91.6% | 96.2% |
| 3357945 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.51 | 39.0 | 2.76e-01 | 97.9% | 25.0% |
| 3365319 | 3012.1.1.11 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › PF27677 | 0.50 | 39.0 | 4.12e-01 | 92.6% | 98.8% |
| 4098005 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.50 | 38.0 | 3.91e-01 | 91.6% | 85.6% |
| 3399407 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 43.0 | 4.29e-01 | 100.0% | 88.0% |
D2
high
residues 259-350
Domain cluster:
rep: SRR1747018_scaffold_15_prodigal-single.1__X__X__00426__D123-129_219-302
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gr5C01 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.65 | 36.0 | 4.16e-01 | 96.7% | 76.6% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.60 | 49.0 | 4.92e-01 | 100.0% | 88.4% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.59 | 30.0 | 3.63e-01 | 81.5% | 77.4% |
| 4i68A00 | 3.30.70.1800 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 4.17e-01 | 100.0% | 75.6% |
| 6c80A03 | 3.40.462.10 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain | 0.57 | 51.0 | 3.85e-01 | 100.0% | 71.9% |
| 1cg2A02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 39.0 | 3.74e-01 | 70.7% | 96.4% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.56 | 38.0 | 3.50e-01 | 100.0% | 53.8% |
| 4ndhB00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.56 | 38.0 | 3.07e-01 | 100.0% | 36.5% |
| 3k7mX02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.55 | 38.0 | 2.97e-01 | 71.7% | 42.2% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.55 | 33.0 | 3.09e-01 | 83.7% | 45.8% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.52 | 41.0 | 3.23e-01 | 84.8% | 85.6% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.50 | 34.0 | 3.22e-01 | 71.7% | 69.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3725727 | 3792.1.1.0 ↗ | beta sandwiches › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain › 26S proteasome subunit Rpn2 C-terminal domain | 0.79 | 32.0 | 3.32e-01 | 82.6% | 41.2% |
| 4932697 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 31.0 | 3.60e-01 | 82.6% | 63.1% |
| 3747353 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.58 | 31.0 | 3.23e-01 | 78.3% | 55.3% |
| 3655848 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 44.0 | 4.39e-01 | 84.8% | 92.6% |
| 3646906 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 39.0 | 3.92e-01 | 73.9% | 94.7% |
| 3925855 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.55 | 38.0 | 3.85e-01 | 100.0% | 72.2% |
| 3238387 | 382.1.1.2 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP | 0.55 | 36.0 | 3.43e-01 | 91.3% | 56.5% |
| 3246188 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 48.0 | 3.45e-01 | 100.0% | 64.6% |
| 4942093 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 44.0 | 3.50e-01 | 89.1% | 77.4% |
| 4011256 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.54 | 46.0 | 3.46e-01 | 100.0% | 56.5% |
| 3891055 | 304.163.1.2 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 | 0.53 | 40.0 | 4.00e-01 | 80.4% | 91.6% |
| 3180053 | 304.6.1.3 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE | 0.53 | 45.0 | 3.40e-01 | 100.0% | 56.5% |
| 4014867 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 45.0 | 3.39e-01 | 100.0% | 56.0% |
| 3512390 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.52 | 39.0 | 4.03e-01 | 78.3% | 100.0% |
| 3795359 | 304.8.1.54 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_13 | 0.52 | 36.0 | 3.77e-01 | 70.7% | 95.0% |
| 3697697 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.52 | 38.0 | 3.59e-01 | 100.0% | 64.2% |
| 222395 | 304.55.1.6 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobA_MobL | 0.52 | 41.0 | 3.23e-01 | 84.8% | 85.6% |
| 3754910 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 43.0 | 2.63e-01 | 92.4% | 54.5% |
| 3998705 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 34.0 | 3.31e-01 | 89.1% | 56.9% |
| 3599871 | 304.6.1.0 ↗ | a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain | 0.52 | 46.0 | 3.24e-01 | 100.0% | 65.3% |
D3
medium
residues 50-146
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m43A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.59 | 42.0 | 3.56e-01 | 76.3% | 50.6% |
| 1s4eG02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.54 | 39.0 | 3.37e-01 | 76.3% | 56.2% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 37.0 | 2.81e-01 | 74.2% | 94.1% |
| 2datA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 36.0 | 3.41e-01 | 72.2% | 85.4% |
| 3idwA00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.50 | 32.0 | 3.75e-01 | 72.2% | 97.0% |
| 3r72A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.50 | 33.0 | 3.08e-01 | 71.1% | 53.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3441434 | 188.1.1.4 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › PF28741 | 0.68 | 47.0 | 3.72e-01 | 72.2% | 61.5% |
| 3863731 | 102.1.1.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 | 0.60 | 43.0 | 4.12e-01 | 76.3% | 73.0% |
| 3290948 | 3960.1.1.1 ↗ | alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C | 0.52 | 37.0 | 3.66e-01 | 82.5% | 71.0% |