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SRR1747065_scaffold_9_prodigal-single.1__X__X__00164
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00164
Identity
- Kingdom:
- phage
Quality
69.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-151
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5u47A01 | 2.20.70.70 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.61 | 17.0 | 3.00e-01 | 84.5% | 93.8% |
| 1kwmA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.51 | 28.0 | 3.52e-01 | 87.2% | 89.8% |
D2
high
residues 244-315
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00160__D6-82
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.72 | 39.0 | 4.14e-01 | 90.3% | 58.5% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 37.0 | 3.82e-01 | 84.7% | 51.4% |
| 1vq8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 37.0 | 3.59e-01 | 90.3% | 50.0% |
| 1eigA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 43.0 | 4.29e-01 | 88.9% | 65.8% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 36.0 | 4.56e-01 | 79.2% | 100.0% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 46.0 | 4.68e-01 | 95.8% | 80.0% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 42.0 | 4.36e-01 | 94.4% | 77.6% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 38.0 | 3.44e-01 | 91.7% | 45.8% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 42.0 | 3.72e-01 | 87.5% | 52.9% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.57 | 40.0 | 3.68e-01 | 94.4% | 55.8% |
| 7x68A01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.56 | 37.0 | 4.17e-01 | 97.2% | 100.0% |
| 7emyA04 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.56 | 45.0 | 2.93e-01 | 93.1% | 55.2% |
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.55 | 45.0 | 3.63e-01 | 100.0% | 47.7% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.54 | 34.0 | 3.42e-01 | 79.2% | 59.7% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.53 | 46.0 | 3.48e-01 | 100.0% | 75.7% |
| 2czoA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.53 | 42.0 | 3.51e-01 | 87.5% | 68.5% |
| 7c9rH01 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.52 | 43.0 | 3.38e-01 | 100.0% | 43.9% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 41.0 | 3.47e-01 | 88.9% | 85.0% |
| 4iglB00 | 2.180.10.10 | Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core | 0.51 | 39.0 | 2.30e-01 | 84.7% | 92.9% |
| 2b78A01 | 2.30.130.10 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain | 0.50 | 26.0 | 2.78e-01 | 80.6% | 51.5% |
| 5amhA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.50 | 38.0 | 3.49e-01 | 87.5% | 100.0% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4330184 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.76 | 41.0 | 3.39e-01 | 84.7% | 30.4% |
| 4928169 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.75 | 42.0 | 4.79e-01 | 86.1% | 74.1% |
| 3794500 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.74 | 43.0 | 3.18e-01 | 87.5% | 22.7% |
| 5035835 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.71 | 41.0 | 4.46e-01 | 80.6% | 68.3% |
| 1576293 | 2003.1.2.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N | 0.70 | 49.0 | 3.19e-01 | 97.2% | 17.5% |
| 4307735 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.67 | 47.0 | 2.96e-01 | 100.0% | 14.0% |
| 2512682 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.67 | 43.0 | 4.77e-01 | 91.7% | 85.5% |
| 3096910 | 2003.1.2.63 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N, GMC_oxred_C, NAD_binding_8 | 0.66 | 46.0 | 2.75e-01 | 100.0% | 9.8% |
| 4990487 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.64 | 38.0 | 3.89e-01 | 86.1% | 61.4% |
| 3933159 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.38e-01 | 94.4% | 97.5% |
| 5010299 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.56 | 28.0 | 3.21e-01 | 80.6% | 64.0% |
| 4947865 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.56 | 28.0 | 3.22e-01 | 80.6% | 64.0% |
| 5073296 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.55 | 28.0 | 3.17e-01 | 81.9% | 64.0% |
| 4034336 | 4.8.1.13 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › ComK | 0.54 | 42.0 | 3.50e-01 | 90.3% | 82.8% |
| 4962305 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.54 | 27.0 | 3.10e-01 | 80.6% | 62.0% |
| 3975056 | 241.13.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › N-terminal domain of secreted effector protein sifA › N-terminal domain of secreted effector protein sifA | 0.54 | 43.0 | 3.67e-01 | 93.1% | 91.5% |
| 3590853 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 27.0 | 2.99e-01 | 80.6% | 58.2% |
| 4947224 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 26.0 | 3.04e-01 | 80.6% | 62.0% |
| 4316044 | 101.1.2.388 ↗ | alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin | 0.53 | 37.0 | 3.57e-01 | 95.8% | 61.1% |
| 3520098 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.78e-01 | 91.7% | 95.2% |
| 3716765 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 36.0 | 2.21e-01 | 76.4% | 67.4% |
| 4032923 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.52 | 38.0 | 2.53e-01 | 80.6% | 59.7% |
| 3576726 | 5.1.2.9 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Apyrase | 0.51 | 40.0 | 2.57e-01 | 94.4% | 64.0% |
| 4646939 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.51 | 42.0 | 3.04e-01 | 97.2% | 85.3% |
| 3743175 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.50 | 38.0 | 2.95e-01 | 84.7% | 63.8% |