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SRR1747065_scaffold_9_prodigal-single.1__X__X__00171

Bact-Vir

SRR1747065_scaffold_9_prodigal-single.1__X__X__00171

Identity

Kingdom:
phage

Quality

66.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 407-534
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01844.30 best HNH 39.0 1.00e-09 37.5% 95.7%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qgpA00 1.10.30.50 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › 0.73 47.0 5.70e-01 75.8% 100.0%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.62 30.0 3.42e-01 82.8% 60.8%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3952776 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.90 46.0 6.53e-01 71.9% 100.0%
4951302 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.83 43.0 5.90e-01 81.2% 100.0%
3981149 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.81 48.0 6.07e-01 87.5% 96.2%
3587782 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.79 56.0 6.09e-01 75.0% 84.5%
5070853 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.79 47.0 5.80e-01 78.1% 90.6%
3590055 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.78 59.0 6.21e-01 78.9% 86.1%
5019258 378.1.1.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH 0.71 44.0 5.46e-01 73.4% 98.8%
3963404 377.1.1.88 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH 0.70 46.0 5.35e-01 98.4% 89.5%
4981807 378.1.1.9 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.64 53.0 4.92e-01 86.7% 87.1%
3307439 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.61 42.0 4.37e-01 71.1% 75.4%
3233597 377.1.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-C4 0.60 37.0 4.59e-01 78.1% 98.8%
2859872 378.1.1.10 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 0.57 44.0 3.84e-01 79.7% 57.1%
3765958 189.1.1.0 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP 0.50 42.0 2.83e-01 93.0% 60.6%