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SRR1747065_scaffold_9_prodigal-single.1__X__X__00190
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00190
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-73
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00160__D6-82
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5j60B02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.71 | 39.0 | 3.21e-01 | 85.7% | 30.8% |
| 3ab1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 36.0 | 2.95e-01 | 84.3% | 28.6% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.58 | 42.0 | 4.42e-01 | 95.7% | 88.7% |
| 6kxkB02 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 39.0 | 3.24e-01 | 80.0% | 92.6% |
| 2xcqA02 | 3.90.199.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase II; domain 5 › Topoisomerase II, domain 5 | 0.53 | 39.0 | 2.68e-01 | 78.6% | 92.3% |
| 2dyiA02 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.53 | 33.0 | 3.35e-01 | 85.7% | 62.0% |
| 1ultB01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.53 | 41.0 | 2.57e-01 | 85.7% | 55.8% |
| 1w97L02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.52 | 43.0 | 4.28e-01 | 95.7% | 90.7% |
| 1sg5A01 | 2.30.30.400 | Mainly Beta › Roll › SH3 type barrels. › Rof-like | 0.52 | 37.0 | 3.60e-01 | 75.7% | 77.9% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5000055 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.71 | 46.0 | 2.85e-01 | 95.7% | 12.3% |
| 4942524 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.69 | 44.0 | 2.73e-01 | 95.7% | 11.2% |
| 3933159 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 52.0 | 3.38e-01 | 94.3% | 97.5% |
| 4927110 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.54 | 25.0 | 2.95e-01 | 85.7% | 60.0% |
| 4972761 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 38.0 | 2.72e-01 | 90.0% | 24.4% |
| 5055312 | 221.1.3.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain | 0.51 | 36.0 | 3.02e-01 | 81.4% | 77.4% |
| 3743175 | 630.1.1.0 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain | 0.51 | 38.0 | 2.97e-01 | 85.7% | 63.8% |
D2
high
residues 80-149
Domain cluster:
rep: SRR1747065_scaffold_9_prodigal-single.1__X__X__00160__D6-82
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e1tA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.77 | 49.0 | 3.30e-01 | 94.3% | 18.5% |
| 5j60B02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.76 | 42.0 | 3.46e-01 | 85.7% | 31.7% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.76 | 39.0 | 4.16e-01 | 82.9% | 56.7% |
| 5ygqA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.76 | 41.0 | 3.33e-01 | 84.3% | 30.3% |
| 3oyyA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.75 | 41.0 | 4.30e-01 | 94.3% | 58.5% |
| 3ab1A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.74 | 40.0 | 3.30e-01 | 84.3% | 29.4% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.73 | 39.0 | 3.97e-01 | 84.3% | 51.4% |
| 1e0bA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.72 | 50.0 | 5.29e-01 | 92.9% | 82.0% |
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 38.0 | 3.71e-01 | 72.9% | 48.7% |
| 4z24A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 52.0 | 3.23e-01 | 100.0% | 17.8% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 43.0 | 3.90e-01 | 94.3% | 55.8% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.60 | 40.0 | 3.57e-01 | 91.4% | 45.8% |
| 4phtY02 | 3.30.420.370 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain | 0.58 | 42.0 | 4.44e-01 | 95.7% | 90.3% |
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.54 | 46.0 | 3.63e-01 | 100.0% | 47.7% |
| 7c9rH01 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.53 | 46.0 | 3.52e-01 | 100.0% | 43.9% |
| 2z3gB00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.52 | 41.0 | 3.47e-01 | 88.6% | 85.0% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.52 | 44.0 | 3.34e-01 | 100.0% | 75.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3586469 | 4.1.1.287 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5641 | 0.85 | 47.0 | 4.40e-01 | 84.3% | 45.9% |
| 4590336 | 2003.1.2.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 | 0.82 | 45.0 | 3.55e-01 | 87.1% | 28.9% |
| 3299665 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.80 | 52.0 | 3.35e-01 | 94.3% | 16.7% |
| 3324054 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.80 | 51.0 | 3.13e-01 | 94.3% | 12.1% |
| 3833162 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.79 | 51.0 | 3.02e-01 | 94.3% | 9.9% |
| None | — | 0.79 | 51.0 | 2.98e-01 | 94.3% | 9.2% | |
| None | — | 0.79 | 51.0 | 3.10e-01 | 94.3% | 11.9% | |
| 5035835 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.79 | 46.0 | 4.92e-01 | 82.9% | 68.3% |
| 5053669 | 2003.1.2.300 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat | 0.78 | 52.0 | 3.11e-01 | 97.1% | 10.7% |
| 4942524 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.78 | 51.0 | 3.10e-01 | 95.7% | 11.5% |
| 3819766 | 244.1.1.11 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › SE | 0.78 | 50.0 | 2.94e-01 | 94.3% | 9.0% |
| 4053572 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.76 | 42.0 | 3.38e-01 | 85.7% | 29.2% |
| 4204534 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.76 | 43.0 | 3.43e-01 | 87.1% | 30.0% |
| 3291240 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.75 | 52.0 | 3.14e-01 | 100.0% | 12.0% |
| 4074446 | 2003.1.2.30 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 | 0.75 | 41.0 | 3.33e-01 | 85.7% | 29.2% |
| 3953673 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.74 | 51.0 | 3.05e-01 | 98.6% | 11.1% |
| 4419838 | 2003.1.2.133 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FMO-like | 0.74 | 41.0 | 3.34e-01 | 85.7% | 30.4% |
| 3283847 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.73 | 50.0 | 2.90e-01 | 100.0% | 8.7% |
| None | — | 0.73 | 50.0 | 3.16e-01 | 97.1% | 14.9% | |
| 4114176 | 2003.1.2.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox | 0.72 | 41.0 | 3.30e-01 | 87.1% | 30.0% |
| 5043091 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.72 | 40.0 | 4.07e-01 | 85.7% | 55.9% |
| 4195604 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.72 | 41.0 | 3.24e-01 | 87.1% | 28.9% |
| 3960168 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.68 | 44.0 | 4.95e-01 | 97.1% | 94.0% |
| 3933159 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 52.0 | 3.42e-01 | 95.7% | 97.8% |
| None | — | 0.60 | 52.0 | 3.28e-01 | 100.0% | 19.5% | |
| None | — | 0.60 | 53.0 | 3.34e-01 | 100.0% | 20.6% | |
| None | — | 0.60 | 52.0 | 3.22e-01 | 100.0% | 17.7% | |
| 3716765 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.57 | 40.0 | 2.39e-01 | 75.7% | 67.2% |
| 3946613 | 2003.1.2.7 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 | 0.56 | 50.0 | 3.65e-01 | 97.1% | 41.1% |
| 5043802 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 47.0 | 4.09e-01 | 98.6% | 94.8% |
| 5013797 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.51 | 34.0 | 3.23e-01 | 94.3% | 54.4% |
| 3711774 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 43.0 | 3.85e-01 | 100.0% | 92.4% |