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SRR1747065_scaffold_9_prodigal-single.1__X__X__00202
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00202
Identity
- Kingdom:
- phage
Quality
83.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 125-277
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00102__D33-183
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02457.22 best | DAC | 144.1 | 2.00e-42 | 77.8% | 98.3% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fb5A02 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.96 | 81.0 | 8.78e-01 | 86.3% | 100.0% |
| 3c1yA01 | 3.40.1700.10 | Alpha Beta › 3-Layer(aba) Sandwich › YojJ-like (1 › DNA integrity scanning protein, DisA, N-terminal domain | 0.83 | 67.0 | 7.10e-01 | 83.7% | 92.8% |
| 5ykwA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 31.0 | 3.64e-01 | 81.0% | 80.2% |
| 6g62A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 33.0 | 3.69e-01 | 81.0% | 79.1% |
| 1zmaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 30.0 | 3.40e-01 | 77.8% | 75.4% |
| 3fk8A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 33.0 | 3.55e-01 | 81.7% | 75.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2494211 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.97 | 91.0 | 8.62e-01 | 96.1% | 84.6% |
| 4254770 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.96 | 89.0 | 8.16e-01 | 95.4% | 77.9% |
| 7058 | 4279.1.1.2 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC,CdaS_N | 0.96 | 81.0 | 7.21e-01 | 86.3% | 65.7% |
| 2793306 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.90 | 84.0 | 8.29e-01 | 97.4% | 93.0% |
| 5006131 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.84 | 70.0 | 6.88e-01 | 85.6% | 92.5% |
| 5067351 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.84 | 71.0 | 7.04e-01 | 88.2% | 93.1% |
| 223828 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.83 | 68.0 | 7.13e-01 | 85.0% | 92.9% |
| 5022518 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.82 | 68.0 | 6.85e-01 | 86.3% | 88.4% |
| 3603286 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.82 | 70.0 | 6.75e-01 | 88.9% | 89.9% |
| 4984801 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.81 | 75.0 | 6.86e-01 | 96.7% | 82.6% |
| 4994324 | 4279.1.1.1 ↗ | a+b three layers › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DisA nucleotide-binding domain › DAC | 0.80 | 66.0 | 6.55e-01 | 85.6% | 91.3% |
| 4030238 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.52 | 42.0 | 3.42e-01 | 86.3% | 96.8% |
| 5004274 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 22.0 | 3.09e-01 | 80.4% | 81.3% |
| 3730558 | 219.1.1.9 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C12 | 0.51 | 41.0 | 3.43e-01 | 85.6% | 96.7% |
| 4583106 | 2485.1.1.44 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_7 | 0.51 | 33.0 | 3.53e-01 | 80.4% | 76.2% |
| 3970664 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.50 | 32.0 | 3.51e-01 | 81.0% | 76.2% |
D2
high
residues 494-587
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kxyA01 | 2.170.120.40 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › YbbR-like domain | 0.81 | 66.0 | 6.95e-01 | 100.0% | 97.6% |
| 6spbV02 | 2.170.120.20 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › Ribosomal protein L25, C-terminal domain | 0.74 | 63.0 | 6.38e-01 | 100.0% | 92.6% |
| 2ogkD00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.52 | 40.0 | 3.53e-01 | 81.9% | 86.6% |
| 1snzB00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 41.0 | 2.85e-01 | 87.2% | 43.0% |
| 4noiA02 | 2.170.120.12 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › DNA-directed RNA polymerase, insert domain | 0.51 | 40.0 | 3.73e-01 | 97.9% | 67.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031714 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.82 | 69.0 | 7.23e-01 | 98.9% | 98.8% |
| 4296675 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.81 | 59.0 | 6.58e-01 | 94.7% | 96.0% |
| 139855 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.81 | 66.0 | 6.53e-01 | 100.0% | 83.0% |
| 4311217 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.79 | 62.0 | 6.36e-01 | 100.0% | 86.7% |
| 4252000 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.78 | 64.0 | 6.70e-01 | 100.0% | 95.3% |
| 4323644 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.78 | 63.0 | 6.48e-01 | 100.0% | 90.0% |
| 4606200 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 61.0 | 6.20e-01 | 100.0% | 86.7% |
| 4609481 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 64.0 | 6.67e-01 | 100.0% | 97.6% |
| 4664604 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 63.0 | 6.19e-01 | 100.0% | 82.0% |
| 4326211 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 60.0 | 6.18e-01 | 100.0% | 86.7% |
| 4380526 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 63.0 | 6.58e-01 | 100.0% | 96.5% |
| 4152723 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.77 | 63.0 | 6.37e-01 | 100.0% | 87.4% |
| 4265070 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 63.0 | 6.42e-01 | 100.0% | 91.1% |
| 4530208 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 65.0 | 6.69e-01 | 100.0% | 95.6% |
| 4089518 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 63.0 | 6.59e-01 | 100.0% | 97.6% |
| 4676509 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 61.0 | 6.30e-01 | 100.0% | 90.0% |
| 4429063 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.76 | 65.0 | 6.63e-01 | 97.9% | 96.7% |
| 4189787 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 63.0 | 5.75e-01 | 100.0% | 69.2% |
| 4061818 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 62.0 | 6.49e-01 | 100.0% | 97.6% |
| 4260166 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 61.0 | 5.84e-01 | 100.0% | 75.0% |
| 4382270 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.76 | 60.0 | 6.46e-01 | 98.9% | 100.0% |
| 4128290 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.75 | 65.0 | 6.63e-01 | 100.0% | 96.7% |
| 3838061 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.75 | 60.0 | 6.40e-01 | 98.9% | 100.0% |
| 4575540 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.75 | 60.0 | 6.39e-01 | 98.9% | 100.0% |
| 4528622 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.75 | 64.0 | 6.09e-01 | 100.0% | 79.1% |
| 4662985 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.75 | 64.0 | 6.59e-01 | 100.0% | 96.7% |
| 4064307 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.73 | 62.0 | 6.31e-01 | 97.9% | 94.4% |
| 4160787 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.72 | 63.0 | 6.24e-01 | 100.0% | 89.0% |
| 3590324 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.72 | 64.0 | 6.46e-01 | 100.0% | 96.8% |
| 4627752 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.71 | 63.0 | 6.43e-01 | 97.9% | 100.0% |
| 1320615 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.71 | 64.0 | 6.32e-01 | 100.0% | 94.9% |
| 4030917 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.68 | 61.0 | 6.08e-01 | 100.0% | 96.8% |
| 4972511 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.53 | 39.0 | 3.40e-01 | 77.7% | 86.2% |
| 3604263 | 882.1.1.4 ↗ | a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding | 0.53 | 40.0 | 3.41e-01 | 78.7% | 85.2% |
D3
high
residues 591-675
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l3uA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.74 | 63.0 | 5.99e-01 | 92.9% | 81.6% |
| 2kpuA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.73 | 66.0 | 6.36e-01 | 100.0% | 88.5% |
| 5hqhA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.73 | 65.0 | 6.25e-01 | 100.0% | 93.8% |
| 2kxyA01 | 2.170.120.40 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › YbbR-like domain | 0.69 | 62.0 | 6.22e-01 | 100.0% | 100.0% |
| 1sh8B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.63 | 55.0 | 4.59e-01 | 98.8% | 66.4% |
| 3gekA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.62 | 53.0 | 4.71e-01 | 100.0% | 67.2% |
| 3rqbA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.60 | 52.0 | 3.77e-01 | 100.0% | 79.2% |
| 1q4tA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 51.0 | 4.44e-01 | 100.0% | 62.0% |
| 4ybvA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.60 | 52.0 | 4.69e-01 | 100.0% | 72.7% |
| 2fs2B00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 51.0 | 4.42e-01 | 100.0% | 62.3% |
| 1c8uA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 50.0 | 4.21e-01 | 98.8% | 59.6% |
| 3e8pA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.59 | 50.0 | 4.24e-01 | 98.8% | 65.4% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.52e-01 | 100.0% | 68.8% |
| 1sbkA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.39e-01 | 100.0% | 63.5% |
| 3s4kA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.49e-01 | 100.0% | 71.0% |
| 3nwzB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.25e-01 | 100.0% | 58.3% |
| 6p2kB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 41.0 | 2.74e-01 | 96.5% | 17.2% |
| 3u0aA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.58 | 49.0 | 3.63e-01 | 100.0% | 36.3% |
| 2v1oB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.25e-01 | 100.0% | 72.3% |
| 2hboA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.58 | 50.0 | 4.35e-01 | 98.8% | 63.2% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 49.0 | 4.11e-01 | 97.6% | 65.1% |
| 2nujA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 4.15e-01 | 98.8% | 68.2% |
| 2w3xB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 48.0 | 4.18e-01 | 100.0% | 75.7% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.57 | 32.0 | 3.75e-01 | 91.8% | 93.8% |
| 5eo4A01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 4.19e-01 | 100.0% | 76.3% |
| 3rd7A00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.56 | 48.0 | 3.48e-01 | 100.0% | 60.4% |
| 2q2bA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 48.0 | 4.18e-01 | 100.0% | 70.2% |
| 3bbjA00 | 2.40.160.210 | Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain | 0.56 | 47.0 | 3.46e-01 | 98.8% | 59.6% |
| 1amiA04 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.56 | 47.0 | 3.55e-01 | 95.3% | 79.6% |
| 3ck1A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 47.0 | 4.07e-01 | 97.6% | 73.4% |
| 4meeA00 | 2.40.128.130 | Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain | 0.56 | 47.0 | 3.33e-01 | 98.8% | 97.7% |
| 2essA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.56 | 47.0 | 4.08e-01 | 100.0% | 72.0% |
| 2o5uA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 47.0 | 4.10e-01 | 100.0% | 72.2% |
| 5e1vB00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.55 | 45.0 | 3.31e-01 | 97.6% | 32.5% |
| 2fujA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 46.0 | 4.27e-01 | 100.0% | 83.9% |
| 5tz6B02 | 3.10.129.120 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.54 | 45.0 | 3.84e-01 | 96.5% | 56.5% |
| 1nepA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 4.00e-01 | 100.0% | 91.5% |
| 3kg6C00 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 44.0 | 3.19e-01 | 98.8% | 30.7% |
| 4kc5C03 | 3.10.129.110 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase | 0.52 | 43.0 | 3.09e-01 | 97.6% | 28.2% |
| 2kpnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 4.23e-01 | 98.8% | 98.7% |
| 7bspA01 | 2.70.150.10 | Mainly Beta › Distorted Sandwich › Calcium-transporting ATPase, cytoplasmic transduction domain A › Calcium-transporting ATPase, cytoplasmic transduction domain A | 0.51 | 42.0 | 3.51e-01 | 90.6% | 81.6% |
| 4mb4A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 40.0 | 4.10e-01 | 97.6% | 93.7% |
| 3icyA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 36.0 | 3.27e-01 | 74.1% | 83.1% |
| 6secA03 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 38.0 | 2.75e-01 | 83.5% | 38.7% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4404535 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.79 | 70.0 | 6.92e-01 | 96.5% | 98.9% |
| 4642896 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.78 | 71.0 | 7.01e-01 | 98.8% | 97.8% |
| 4429063 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.68 | 60.0 | 5.93e-01 | 97.6% | 98.9% |
| 134100 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.62 | 53.0 | 4.70e-01 | 100.0% | 66.7% |
| 3286021 | 222.1.1.15 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C | 0.61 | 52.0 | 4.36e-01 | 98.8% | 57.0% |
| 3970321 | 222.1.1.15 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C | 0.61 | 53.0 | 4.39e-01 | 100.0% | 55.6% |
| 4033783 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.61 | 52.0 | 4.69e-01 | 98.8% | 70.2% |
| 4299577 | 3121.1.1.15 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › FabA | 0.60 | 43.0 | 4.58e-01 | 82.4% | 91.4% |
| 5040789 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.60 | 51.0 | 4.56e-01 | 100.0% | 68.5% |
| 1250391 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.60 | 51.0 | 4.44e-01 | 100.0% | 62.4% |
| 3932703 | 11.2.1.50 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2_GDE1 | 0.60 | 45.0 | 4.35e-01 | 80.0% | 100.0% |
| 1549035 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.59 | 51.0 | 4.26e-01 | 98.8% | 56.1% |
| 5019618 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.59 | 51.0 | 4.29e-01 | 100.0% | 56.0% |
| 4623775 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.59 | 51.0 | 4.41e-01 | 100.0% | 62.1% |
| 3237031 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.59 | 51.0 | 4.12e-01 | 100.0% | 53.1% |
| 5007316 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.59 | 50.0 | 4.45e-01 | 97.6% | 66.2% |
| 430591 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.59 | 50.0 | 4.26e-01 | 100.0% | 60.4% |
| 3638940 | 222.1.1.15 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C | 0.59 | 50.0 | 3.98e-01 | 97.6% | 58.9% |
| 4030329 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.59 | 44.0 | 3.87e-01 | 82.4% | 92.6% |
| 168807 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.58 | 50.0 | 4.52e-01 | 100.0% | 68.8% |
| 3956737 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.58 | 50.0 | 4.04e-01 | 98.8% | 53.1% |
| 3823844 | 222.1.1.15 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_3C | 0.58 | 50.0 | 4.05e-01 | 100.0% | 53.1% |
| 1397992 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.58 | 49.0 | 4.32e-01 | 98.8% | 64.7% |
| 3374363 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.58 | 49.0 | 3.99e-01 | 100.0% | 51.1% |
| 3970883 | 222.1.1.25 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › ChapFlgA_N | 0.58 | 49.0 | 4.91e-01 | 98.8% | 100.0% |
| 5041378 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.57 | 49.0 | 4.14e-01 | 100.0% | 60.8% |
| 3635098 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.57 | 49.0 | 4.11e-01 | 100.0% | 58.9% |
| 421447 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.57 | 48.0 | 4.04e-01 | 98.8% | 57.8% |
| 3781646 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.57 | 40.0 | 2.87e-01 | 72.9% | 44.2% |
| 6061 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.57 | 49.0 | 4.07e-01 | 100.0% | 66.0% |
| 3279090 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.57 | 47.0 | 4.19e-01 | 97.6% | 69.6% |
| 3639333 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.56 | 42.0 | 3.52e-01 | 82.4% | 100.0% |
| 2105372 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.56 | 47.0 | 3.99e-01 | 97.6% | 66.5% |
| 5038417 | 222.1.1.11 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › DUF4442 | 0.56 | 48.0 | 4.18e-01 | 100.0% | 61.4% |
| 3915274 | 11.1.6.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain › FIIND | 0.56 | 41.0 | 3.54e-01 | 96.5% | 48.9% |
| 4451012 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.55 | 47.0 | 3.88e-01 | 98.8% | 55.3% |
| 3523715 | 11.1.1.550 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin_3 | 0.55 | 47.0 | 4.36e-01 | 98.8% | 100.0% |
| 5043415 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.55 | 47.0 | 4.22e-01 | 95.3% | 88.3% |
| 3275862 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.55 | 46.0 | 3.70e-01 | 100.0% | 53.7% |
| 4270547 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.55 | 47.0 | 4.11e-01 | 100.0% | 80.0% |
| 4461780 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.54 | 46.0 | 3.71e-01 | 98.8% | 93.0% |
| 4263600 | 222.1.1.12 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH | 0.54 | 46.0 | 3.64e-01 | 98.8% | 89.2% |
| 4940594 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 4.44e-01 | 100.0% | 100.0% |
| 5079018 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 38.0 | 3.84e-01 | 80.0% | 76.5% |
| 4367032 | 222.1.1.8 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT_2 | 0.53 | 43.0 | 3.82e-01 | 97.6% | 72.9% |
| 3251255 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 45.0 | 4.08e-01 | 100.0% | 100.0% |
| 3641705 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.52 | 40.0 | 3.76e-01 | 84.7% | 77.1% |
| 137754 | 3414.1.1.3 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › Bact_surface_Ig-like | 0.52 | 42.0 | 4.05e-01 | 100.0% | 80.4% |
| 3906914 | 11.1.1.247 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_plexin | 0.51 | 43.0 | 4.20e-01 | 95.3% | 100.0% |
| 4059161 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.51 | 43.0 | 3.64e-01 | 98.8% | 58.1% |
| 4944536 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 30.0 | 3.37e-01 | 76.5% | 76.9% |
| 3481174 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 41.0 | 2.90e-01 | 90.6% | 69.3% |
D4
medium
residues 3-115
Domain cluster:
representative
D5
medium
residues 306-394
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07949.18 best | YbbR | 30.7 | 4.50e-07 | 91.0% | 90.1% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hqhA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.83 | 75.0 | 7.33e-01 | 100.0% | 89.6% |
| 2kq1A01 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.76 | 67.0 | 6.66e-01 | 100.0% | 93.5% |
| 2kpuA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.75 | 63.0 | 6.14e-01 | 100.0% | 84.4% |
| 2l3uA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.72 | 56.0 | 5.51e-01 | 91.0% | 77.6% |
| 6em3x01 | 3.40.50.10480 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain | 0.55 | 45.0 | 3.60e-01 | 100.0% | 43.8% |
| 1jp4A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 46.0 | 3.81e-01 | 100.0% | 85.0% |
| 1avgI00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.53 | 36.0 | 3.20e-01 | 97.8% | 45.1% |
| 2c1iA01 | 3.30.565.50 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.51 | 41.0 | 3.83e-01 | 94.4% | 70.3% |
| 5oj2A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.53e-01 | 74.2% | 84.0% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4404535 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.86 | 76.0 | 7.66e-01 | 94.4% | 93.2% |
| 4266764 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.81 | 73.0 | 7.21e-01 | 98.9% | 91.6% |
| 4642896 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.78 | 68.0 | 6.80e-01 | 96.6% | 92.2% |
| 4671999 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.75 | 68.0 | 6.45e-01 | 100.0% | 93.3% |
| 178324 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.72 | 56.0 | 5.68e-01 | 91.0% | 84.4% |
| 1320615 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.67 | 59.0 | 5.76e-01 | 100.0% | 92.9% |
| 4627752 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.67 | 57.0 | 5.78e-01 | 96.6% | 96.7% |
| 3574186 | 7502.1.1.2 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix | 0.54 | 46.0 | 3.55e-01 | 100.0% | 40.0% |
D6
medium
residues 398-485
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07949.18 best | YbbR | 23.4 | 8.50e-05 | 88.6% | 84.0% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kxyA01 | 2.170.120.40 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › YbbR-like domain | 0.87 | 71.0 | 7.27e-01 | 96.6% | 89.4% |
| 5hqhA00 | 2.170.120.30 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › | 0.71 | 61.0 | 5.97e-01 | 97.7% | 86.5% |
| 5nrgS02 | 2.170.120.20 | Mainly Beta › Beta Complex › RNA Polymerase Alpha Subunit; Chain A, domain 2 › Ribosomal protein L25, C-terminal domain | 0.69 | 57.0 | 5.85e-01 | 100.0% | 96.3% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031714 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.90 | 75.0 | 7.66e-01 | 95.5% | 90.6% |
| 3588391 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.88 | 74.0 | 7.54e-01 | 95.5% | 90.6% |
| 4627752 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.87 | 78.0 | 7.78e-01 | 94.3% | 92.2% |
| 139855 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.84 | 72.0 | 6.93e-01 | 100.0% | 81.0% |
| 3590324 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.83 | 75.0 | 7.34e-01 | 96.6% | 89.5% |
| 1320615 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.82 | 76.0 | 7.37e-01 | 100.0% | 89.8% |
| 4030917 | 240.1.1.1 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › YbbR | 0.81 | 72.0 | 7.07e-01 | 96.6% | 89.5% |
| 4296675 | 240.1.1.0 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related | 0.79 | 63.0 | 6.71e-01 | 100.0% | 98.7% |
| 4260166 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.74 | 60.0 | 5.58e-01 | 100.0% | 70.4% |
| 4283240 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.74 | 59.0 | 6.08e-01 | 100.0% | 89.4% |
| 4645736 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.73 | 59.0 | 6.05e-01 | 100.0% | 90.6% |
| 4080154 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.72 | 58.0 | 5.93e-01 | 100.0% | 89.4% |
| 4258088 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.72 | 58.0 | 5.73e-01 | 100.0% | 81.1% |
| 4324087 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.71 | 58.0 | 5.64e-01 | 98.9% | 80.0% |
| 4120808 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.71 | 58.0 | 5.70e-01 | 100.0% | 81.1% |
| 4451536 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.71 | 60.0 | 5.85e-01 | 100.0% | 83.2% |
| 4369517 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.71 | 58.0 | 5.93e-01 | 100.0% | 90.6% |
| 3080540 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.70 | 56.0 | 5.78e-01 | 98.9% | 91.6% |
| 4204768 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.70 | 57.0 | 5.87e-01 | 100.0% | 91.8% |
| 4290179 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.70 | 56.0 | 5.29e-01 | 98.9% | 72.4% |
| 4363055 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.69 | 56.0 | 5.48e-01 | 100.0% | 81.1% |
| 3838061 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.68 | 54.0 | 5.60e-01 | 96.6% | 92.5% |
| 4590230 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.68 | 59.0 | 5.87e-01 | 100.0% | 92.2% |
| 4450541 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.67 | 55.0 | 5.35e-01 | 100.0% | 79.0% |
| 4156145 | 240.1.1.2 ↗ | a+b complex topology › Ribosomal protein TL5/L25 C-terminal domain-like › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal protein TL5/L25 C-terminal domain-related › Ribosomal_TL5_C | 0.65 | 59.0 | 5.61e-01 | 100.0% | 83.8% |
| 4961901 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.54 | 45.0 | 3.56e-01 | 93.2% | 87.8% |
| 5017867 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.52 | 43.0 | 3.56e-01 | 94.3% | 96.4% |