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SRR1747065_scaffold_9_prodigal-single.1__X__X__00217
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00217
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-116
Domain cluster:
rep: OK896991.1__UDY80742.1__X__00073__D5-103
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02452.24 best | PemK_toxin | 23.7 | 6.30e-05 | 93.8% | 74.3% |
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 71.0 | 7.32e-01 | 99.1% | 94.4% |
| 5uctB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 68.0 | 7.21e-01 | 99.1% | 97.0% |
| 1ub4A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 63.0 | 6.60e-01 | 98.2% | 91.3% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 40.0 | 4.73e-01 | 81.2% | 70.0% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 70.0 | 6.97e-01 | 99.1% | 93.1% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 42.0 | 5.15e-01 | 81.2% | 83.3% |
| 1m1fB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 65.0 | 6.75e-01 | 99.1% | 96.2% |
| 7oc3A01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 41.0 | 4.52e-01 | 81.2% | 65.2% |
| 3askA02 | 2.30.30.1150 | Mainly Beta › Roll › SH3 type barrels. › | 0.73 | 41.0 | 3.66e-01 | 81.2% | 40.4% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.72 | 38.0 | 5.04e-01 | 82.1% | 93.7% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 36.0 | 4.49e-01 | 81.2% | 94.2% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 34.0 | 4.08e-01 | 78.6% | 86.1% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 30.0 | 3.83e-01 | 80.4% | 88.9% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.56 | 38.0 | 4.14e-01 | 81.2% | 83.2% |
| 1w4sA00 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.53 | 46.0 | 4.21e-01 | 94.6% | 80.1% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.52 | 26.0 | 3.41e-01 | 76.8% | 89.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.92 | 76.0 | 8.05e-01 | 98.2% | 95.0% |
| 5012680 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.86 | 77.0 | 7.83e-01 | 98.2% | 95.5% |
| 4950222 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.84 | 74.0 | 7.55e-01 | 99.1% | 94.5% |
| 5065801 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.84 | 72.0 | 7.42e-01 | 98.2% | 95.2% |
| 1952922 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.83 | 72.0 | 7.37e-01 | 99.1% | 94.5% |
| 4645229 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 73.0 | 7.41e-01 | 100.0% | 95.4% |
| 2507392 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 70.0 | 7.04e-01 | 100.0% | 89.3% |
| 2046239 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.82 | 68.0 | 7.21e-01 | 99.1% | 97.0% |
| 4928262 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.80 | 71.0 | 7.16e-01 | 97.3% | 95.5% |
| 5062749 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.78 | 71.0 | 7.12e-01 | 100.0% | 94.7% |
| 5045554 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.78 | 71.0 | 7.00e-01 | 100.0% | 91.6% |
| 4938225 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.78 | 66.0 | 6.87e-01 | 100.0% | 96.2% |
| 4950603 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.77 | 68.0 | 6.75e-01 | 100.0% | 90.4% |
| 4667326 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.77 | 71.0 | 7.08e-01 | 100.0% | 95.7% |
| 1109151 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.77 | 71.0 | 6.92e-01 | 100.0% | 91.7% |
| 3540253 | 4.1.1.78 ↗ | beta barrels › SH3 › SH3 › SH3 › TTD | 0.76 | 44.0 | 4.75e-01 | 81.2% | 67.4% |
| 4961922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 66.0 | 6.68e-01 | 100.0% | 95.4% |
| 3441143 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.75 | 41.0 | 4.39e-01 | 82.1% | 61.0% |
| 3185321 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.75 | 44.0 | 5.25e-01 | 83.0% | 86.7% |
| 3965064 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.74 | 69.0 | 6.66e-01 | 100.0% | 92.0% |
| 3347795 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.72 | 42.0 | 4.95e-01 | 86.6% | 82.5% |
| 3934278 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.70 | 39.0 | 3.86e-01 | 81.2% | 52.2% |
| 3952707 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 61.0 | 5.77e-01 | 99.1% | 80.8% |
| 3416672 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 41.0 | 4.35e-01 | 86.6% | 67.0% |
| 4377781 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.67 | 39.0 | 4.45e-01 | 84.8% | 78.8% |
| 4982354 | 4.7.1.0 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 | 0.66 | 36.0 | 4.53e-01 | 84.8% | 90.8% |
| 3963504 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 58.0 | 5.54e-01 | 98.2% | 92.3% |
| 3828614 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.61 | 48.0 | 4.91e-01 | 90.2% | 84.5% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.60 | 35.0 | 3.77e-01 | 80.4% | 66.3% |
| 4235293 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 4.48e-01 | 81.2% | 76.5% |
| 4674170 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.58 | 41.0 | 4.04e-01 | 95.5% | 67.5% |
| 3798523 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.58 | 39.0 | 4.49e-01 | 82.1% | 96.2% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.58 | 38.0 | 4.03e-01 | 81.2% | 75.0% |
| 4063634 | 4.1.1.17 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 | 0.57 | 40.0 | 3.93e-01 | 96.4% | 66.1% |
| 4017498 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 4.53e-01 | 90.2% | 81.4% |
| 3819164 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.56 | 50.0 | 4.32e-01 | 96.4% | 78.2% |
| 4174957 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.56 | 50.0 | 4.13e-01 | 97.3% | 69.7% |
| 573 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.56 | 38.0 | 4.14e-01 | 81.2% | 83.2% |
| 3992087 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.55 | 48.0 | 4.09e-01 | 92.0% | 70.6% |
| 3491822 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 35.0 | 4.19e-01 | 75.0% | 97.3% |
| 4012953 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.50 | 34.0 | 3.09e-01 | 78.6% | 51.3% |