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SRR1747065_scaffold_9_prodigal-single.1__X__X__00223
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00223
Identity
- Kingdom:
- phage
Quality
63.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 227-407
Domain cluster:
rep: MG752970.1__AVH85374.1__RsoM2USA_446__00446__D13-175
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07728.21 best | AAA_5 | 71.8 | 8.10e-20 | 82.9% | 99.3% |
D2
high
residues 414-513
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ay5A02 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.80 | 74.0 | 6.17e-01 | 100.0% | 78.2% |
| 1r0dA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.79 | 72.0 | 5.75e-01 | 100.0% | 79.8% |
| 1q6aA00 | 1.10.1240.30 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain | 0.75 | 43.0 | 4.20e-01 | 100.0% | 52.3% |
| 1xg2B00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.73 | 59.0 | 5.17e-01 | 87.0% | 75.5% |
| 2jswA00 | 1.20.1410.10 | Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain | 0.73 | 66.0 | 5.33e-01 | 100.0% | 81.0% |
| 2jbrA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.73 | 62.0 | 5.05e-01 | 93.0% | 90.3% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.73 | 58.0 | 5.15e-01 | 87.0% | 77.6% |
| 1rj1A00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.72 | 60.0 | 5.23e-01 | 89.0% | 73.6% |
| 4doyA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.72 | 59.0 | 4.85e-01 | 89.0% | 78.7% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.72 | 58.0 | 5.60e-01 | 88.0% | 91.2% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.71 | 64.0 | 5.50e-01 | 100.0% | 79.2% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 60.0 | 5.02e-01 | 93.0% | 89.7% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.71 | 64.0 | 5.41e-01 | 100.0% | 74.3% |
| 2ix5A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 58.0 | 5.02e-01 | 89.0% | 80.0% |
| 5zw7A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.70 | 57.0 | 4.98e-01 | 88.0% | 82.2% |
| 2jifA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.70 | 58.0 | 5.00e-01 | 89.0% | 77.9% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.70 | 62.0 | 5.43e-01 | 100.0% | 80.0% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.69 | 57.0 | 4.92e-01 | 89.0% | 77.4% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.68 | 56.0 | 5.31e-01 | 90.0% | 95.1% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 50.0 | 5.37e-01 | 77.0% | 94.2% |
| 2c2jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 60.0 | 5.14e-01 | 100.0% | 74.5% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 53.0 | 5.33e-01 | 88.0% | 98.0% |
| 2radA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.65 | 50.0 | 4.65e-01 | 82.0% | 70.9% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 44.0 | 4.40e-01 | 71.0% | 69.0% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.65 | 51.0 | 4.46e-01 | 86.0% | 61.1% |
| 1cpcB00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.64 | 45.0 | 3.73e-01 | 72.0% | 77.3% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.63 | 37.0 | 4.11e-01 | 90.0% | 73.1% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 49.0 | 4.34e-01 | 87.0% | 69.3% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 48.0 | 4.36e-01 | 85.0% | 72.3% |
| 2yqdA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.62 | 51.0 | 4.81e-01 | 91.0% | 90.0% |
| 3jrtA00 | 1.20.120.1060 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 43.0 | 3.67e-01 | 73.0% | 77.1% |
| 5mq1A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 51.0 | 5.02e-01 | 92.0% | 95.4% |
| 4uyeA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 50.0 | 4.88e-01 | 90.0% | 94.5% |
| 4zvaA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 46.0 | 3.99e-01 | 79.0% | 93.3% |
| 2r0yA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.61 | 50.0 | 4.46e-01 | 91.0% | 87.6% |
| 5n13A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.60 | 49.0 | 4.87e-01 | 91.0% | 98.1% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.60 | 54.0 | 4.69e-01 | 100.0% | 79.2% |
| 1t72A01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.60 | 41.0 | 3.88e-01 | 70.0% | 85.5% |
| 4nwpD00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.59 | 52.0 | 4.58e-01 | 98.0% | 79.2% |
| 2yw5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.58 | 49.0 | 4.40e-01 | 91.0% | 79.7% |
| 1nigA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.58 | 51.0 | 4.52e-01 | 98.0% | 76.7% |
| 2xseA00 | 1.20.120.1440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain | 0.57 | 42.0 | 3.69e-01 | 79.0% | 76.7% |
| 3dd7C00 | 1.20.120.1870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain | 0.56 | 42.0 | 4.02e-01 | 81.0% | 72.1% |
| 2r6aC01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.56 | 29.0 | 3.03e-01 | 99.0% | 51.0% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.56 | 47.0 | 4.25e-01 | 94.0% | 99.3% |
| 7zviA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 41.0 | 3.88e-01 | 82.0% | 68.9% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 40.0 | 3.59e-01 | 82.0% | 93.1% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 37.0 | 3.29e-01 | 72.0% | 94.5% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.52 | 40.0 | 3.86e-01 | 89.0% | 73.9% |
| 4b4yA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 37.0 | 3.36e-01 | 81.0% | 96.6% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3621635 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.79 | 73.0 | 6.29e-01 | 100.0% | 78.0% |
| 3739123 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.76 | 69.0 | 5.44e-01 | 100.0% | 76.1% |
| 4026518 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.76 | 62.0 | 4.67e-01 | 88.0% | 89.6% |
| 3316910 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.76 | 61.0 | 5.29e-01 | 87.0% | 72.3% |
| 3514956 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.76 | 68.0 | 5.46e-01 | 100.0% | 77.9% |
| 3827313 | 633.4.1.0 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor | 0.74 | 60.0 | 5.89e-01 | 88.0% | 97.3% |
| 3303028 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.74 | 61.0 | 5.30e-01 | 90.0% | 83.2% |
| 4383079 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.73 | 59.0 | 5.14e-01 | 88.0% | 70.3% |
| 3930444 | 601.1.2.2 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › I_LWEQ | 0.73 | 65.0 | 4.90e-01 | 100.0% | 60.4% |
| 5056108 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.71 | 64.0 | 5.41e-01 | 100.0% | 84.8% |
| 3588616 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.69 | 58.0 | 5.71e-01 | 93.0% | 86.7% |
| 3731715 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.68 | 53.0 | 4.22e-01 | 85.0% | 87.1% |
| 3789302 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.67 | 42.0 | 4.22e-01 | 80.0% | 62.0% |
| 5028163 | 131.1.1.12 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 | 0.65 | 52.0 | 4.23e-01 | 99.0% | 45.1% |
| 4279546 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.64 | 51.0 | 4.61e-01 | 85.0% | 95.6% |
| 3934654 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.63 | 44.0 | 3.65e-01 | 72.0% | 88.9% |
| 5048002 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.62 | 48.0 | 4.32e-01 | 100.0% | 60.7% |
| 3537455 | 207.2.1.69 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › INT_SG_DDX_CT_C | 0.60 | 35.0 | 3.75e-01 | 77.0% | 65.2% |
| 5072346 | 5082.1.1.1 ↗ | alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux | 0.59 | 53.0 | 4.21e-01 | 99.0% | 72.0% |
| 3731551 | 106.1.1.7 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Protoglobin | 0.58 | 46.0 | 3.64e-01 | 83.0% | 83.0% |
| 3407641 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.58 | 41.0 | 3.56e-01 | 73.0% | 76.1% |
| 4068116 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.57 | 44.0 | 4.22e-01 | 100.0% | 70.4% |
| 3504717 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.57 | 40.0 | 3.57e-01 | 72.0% | 82.8% |
| 3180584 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.55 | 39.0 | 4.11e-01 | 75.0% | 85.6% |
| 3233997 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.54 | 42.0 | 4.19e-01 | 99.0% | 81.0% |
| 3641962 | 101.1.10.36 ↗ | alpha arrays › HTH › HTH › Cyclin-like › MOM1 | 0.54 | 41.0 | 4.41e-01 | 99.0% | 97.6% |
| 4030724 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.54 | 40.0 | 3.28e-01 | 79.0% | 87.0% |
| 3218595 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.54 | 44.0 | 3.52e-01 | 90.0% | 86.8% |
| 3170793 | 191.1.1.6 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › COQ9 | 0.53 | 41.0 | 3.63e-01 | 81.0% | 87.6% |
| 3932619 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 43.0 | 3.95e-01 | 90.0% | 66.7% |
| 3215455 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 43.0 | 3.80e-01 | 91.0% | 59.4% |
| 4928509 | 3962.1.1.1 ↗ | alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit › HsdM_N | 0.52 | 42.0 | 3.98e-01 | 100.0% | 71.7% |
| 3522050 | 109.3.1.131 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › INT_SG_DDX_CT_C | 0.52 | 35.0 | 4.00e-01 | 94.0% | 93.2% |
| 4179226 | 3171.1.1.1 ↗ | alpha arrays › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › Nitrogenase gamma subunit N-terminal domain › DIMCO_N | 0.51 | 38.0 | 4.12e-01 | 95.0% | 100.0% |
| 3172193 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.51 | 41.0 | 3.53e-01 | 91.0% | 52.6% |
| 3177920 | 5048.1.1.1 ↗ | alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP | 0.51 | 41.0 | 3.04e-01 | 88.0% | 72.6% |
| 3276335 | 109.26.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › TPR_NUP160_120_M | 0.50 | 46.0 | 3.81e-01 | 100.0% | 72.0% |
| 3834205 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.50 | 45.0 | 3.83e-01 | 100.0% | 67.3% |
D3
medium
residues 1-128
D4
medium
residues 129-217