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SRR1747065_scaffold_9_prodigal-single.1__X__X__00238
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00238
Identity
- Kingdom:
- phage
Quality
63.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-64
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12773.14 best | DZR | 38.8 | 1.10e-09 | 84.4% | 100.0% |
| PF13240.12 | Zn_Ribbon_1 | 31.7 | 1.20e-07 | 35.9% | 91.3% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4067548 | 386.1.1.79 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › UPF0547 | 0.82 | 39.0 | 4.23e-01 | 90.6% | 54.5% |
| 5084031 | 375.2.1.5 ↗ | few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › UPF0547 | 0.79 | 37.0 | 5.04e-01 | 90.6% | 85.7% |
D2
medium
residues 86-140
D3
medium
residues 142-212
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1izmA00 | 1.20.120.740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 | 0.71 | 58.0 | 4.40e-01 | 90.1% | 90.0% |
| 4r3aA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 46.0 | 3.47e-01 | 84.5% | 76.1% |
| 3a9zA02 | 1.10.260.50 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › | 0.59 | 44.0 | 4.11e-01 | 81.7% | 85.6% |
| 3nhiA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 42.0 | 3.44e-01 | 94.4% | 97.3% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3762669 | 4970.1.1.16 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › TMEM218_N | 0.68 | 52.0 | 4.57e-01 | 83.1% | 58.1% |
| 3218433 | 3652.1.1.0 ↗ | alpha duplicates or obligate multimers › Qua1 › Qua1 › Qua1 | 0.67 | 45.0 | 5.18e-01 | 71.8% | 98.0% |
| 3651735 | 632.15.1.8 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › FPP | 0.66 | 54.0 | 5.17e-01 | 95.8% | 83.5% |