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SRR1747065_scaffold_9_prodigal-single.1__X__X__00246
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00246
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 83-379
Domain cluster:
rep: IMGVR_UViG_3300020369_000079-3300020369-Ga0211709_100073652__D2-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09587.16 best | PGA_cap | 154.2 | 6.70e-45 | 77.8% | 98.8% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1uf3A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.75 | 56.0 | 6.38e-01 | 91.6% | 99.6% |
| 1t70A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.72 | 61.0 | 6.56e-01 | 90.9% | 100.0% |
| 3av0A01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.72 | 59.0 | 6.38e-01 | 92.6% | 99.6% |
| 1t71A00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.72 | 63.0 | 6.54e-01 | 92.9% | 96.1% |
| 5karA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.68 | 64.0 | 5.67e-01 | 99.3% | 96.8% |
| 2uvaG04 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 50.0 | 5.07e-01 | 99.7% | 86.2% |
| 2y7eB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 51.0 | 5.28e-01 | 98.7% | 92.8% |
| 2o7sA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 46.0 | 5.09e-01 | 99.3% | 97.9% |
| 3ajvC02 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.60 | 19.0 | 3.35e-01 | 79.5% | 85.7% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 46.0 | 5.07e-01 | 99.0% | 99.1% |
| 3ndoA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 43.0 | 4.90e-01 | 98.0% | 96.0% |
| 2p0oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 46.0 | 5.12e-01 | 97.3% | 100.0% |
| 2cvbA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 29.0 | 3.60e-01 | 98.3% | 73.8% |
| 7xyrA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 47.0 | 4.98e-01 | 98.7% | 95.4% |
| 1mzhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 41.0 | 4.63e-01 | 94.6% | 94.2% |
| 1jcjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 45.0 | 4.83e-01 | 96.6% | 94.8% |
| 1vliA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.57 | 49.0 | 4.98e-01 | 100.0% | 91.5% |
| 4cqbA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 51.0 | 5.13e-01 | 99.0% | 94.4% |
| 5a6sA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 37.0 | 4.46e-01 | 85.5% | 99.5% |
| 7tbvB02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 43.0 | 4.70e-01 | 98.3% | 96.7% |
| 3bleA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 51.0 | 5.12e-01 | 97.3% | 98.7% |
| 1sfsA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 39.0 | 4.52e-01 | 82.5% | 97.7% |
| 3s2cA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 50.0 | 4.81e-01 | 96.3% | 98.8% |
| 2vrkA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 51.0 | 4.80e-01 | 98.7% | 99.7% |
| 1jqlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 28.0 | 3.89e-01 | 89.2% | 99.3% |
| 5c54G00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 50.0 | 5.00e-01 | 97.0% | 100.0% |
| 4ff5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 39.0 | 4.37e-01 | 87.9% | 93.4% |
| 3fkkA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 50.0 | 4.99e-01 | 97.6% | 97.7% |
| 2pz0B00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.54 | 43.0 | 4.70e-01 | 96.6% | 100.0% |
| 6arhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 49.0 | 4.91e-01 | 97.3% | 100.0% |
| 2qjgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 45.0 | 4.72e-01 | 96.3% | 97.1% |
| 3i45A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 31.0 | 3.84e-01 | 91.2% | 91.1% |
| 6fcxA01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.53 | 47.0 | 4.83e-01 | 98.7% | 99.3% |
| 3b4uA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 47.0 | 4.86e-01 | 97.6% | 99.7% |
| 2a4aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 42.0 | 4.52e-01 | 82.8% | 97.6% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.52 | 47.0 | 4.82e-01 | 96.0% | 98.6% |
| 2eplX02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 4.75e-01 | 98.0% | 99.4% |
| 2i9uA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.52 | 47.0 | 4.69e-01 | 99.0% | 93.2% |
| 2waaA02 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 37.0 | 4.21e-01 | 88.9% | 99.5% |
| 4dqlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 28.0 | 3.67e-01 | 76.1% | 94.4% |
| 2qtlA03 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.52 | 28.0 | 3.73e-01 | 75.1% | 98.1% |
| 3b8iC00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.50 | 41.0 | 4.23e-01 | 93.6% | 89.6% |
| 1s2uB00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.50 | 39.0 | 4.01e-01 | 93.6% | 82.4% |
| 2eo0B00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.50 | 23.0 | 3.41e-01 | 81.8% | 99.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951967 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.88 | 83.0 | 8.28e-01 | 100.0% | 94.3% |
| 4250091 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.87 | 86.0 | 7.98e-01 | 100.0% | 86.0% |
| 3955969 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.87 | 85.0 | 7.67e-01 | 100.0% | 92.0% |
| 4953132 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.85 | 83.0 | 8.08e-01 | 100.0% | 93.4% |
| 3732238 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.84 | 82.0 | 7.46e-01 | 100.0% | 91.7% |
| 3722551 | 246.2.1.19 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › PGA_cap | 0.83 | 80.0 | 7.42e-01 | 100.0% | 90.6% |
| 5068243 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.76 | 58.0 | 6.52e-01 | 94.3% | 100.0% |
| 3947494 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.73 | 60.0 | 6.52e-01 | 91.9% | 100.0% |
| 5023513 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.71 | 60.0 | 6.45e-01 | 90.9% | 100.0% |
| 4966372 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.68 | 60.0 | 6.12e-01 | 91.6% | 100.0% |
| 4942412 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.67 | 59.0 | 6.21e-01 | 91.9% | 100.0% |
| 5037144 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 25.0 | 3.83e-01 | 70.7% | 84.7% |
| 4026997 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.63 | 55.0 | 5.69e-01 | 95.6% | 96.5% |
| 5061803 | 2002.1.1.66 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I | 0.62 | 48.0 | 5.31e-01 | 99.0% | 99.6% |
| 4983181 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 25.0 | 3.87e-01 | 83.2% | 90.8% |
| 4927057 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.61 | 28.0 | 4.20e-01 | 80.8% | 99.2% |
| 4052713 | 2487.1.1.18 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Peptidase_S66C | 0.60 | 27.0 | 3.86e-01 | 99.0% | 88.6% |
| 5057728 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 27.0 | 4.06e-01 | 84.5% | 99.2% |
| 3619194 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.58 | 28.0 | 4.04e-01 | 72.7% | 100.0% |
| 3286123 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.58 | 53.0 | 4.81e-01 | 99.7% | 94.6% |
| 3736568 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 30.0 | 4.07e-01 | 72.7% | 95.5% |
| 3278483 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.57 | 53.0 | 4.71e-01 | 99.7% | 91.1% |
| 4425971 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.56 | 52.0 | 4.86e-01 | 97.6% | 91.6% |
| 5056661 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.55 | 29.0 | 3.95e-01 | 80.1% | 98.7% |
| 1066802 | 2002.1.1.55 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_25 | 0.55 | 39.0 | 4.37e-01 | 87.9% | 93.4% |
| 4162018 | 7574.1.1.7 ↗ | a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › TPP_enzyme_N | 0.54 | 31.0 | 3.88e-01 | 91.9% | 90.6% |
| 4999072 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.54 | 25.0 | 3.56e-01 | 76.4% | 93.8% |
| 4959854 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.54 | 46.0 | 4.78e-01 | 98.0% | 97.1% |
| 4369167 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.53 | 49.0 | 4.36e-01 | 97.6% | 80.7% |
| 4521555 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 40.0 | 4.38e-01 | 89.6% | 94.3% |
| 3975323 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.52 | 46.0 | 4.63e-01 | 94.6% | 92.9% |
| 4953127 | 2007.1.3.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding | 0.52 | 26.0 | 3.58e-01 | 77.4% | 93.3% |
| 4268595 | 2002.1.1.90 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTHFR | 0.52 | 47.0 | 4.70e-01 | 98.7% | 93.4% |
| 4363238 | 2003.1.1.123 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DUF166 | 0.52 | 29.0 | 3.84e-01 | 89.2% | 100.0% |
| 4972341 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 40.0 | 4.08e-01 | 80.1% | 97.6% |
| 4590511 | 2002.1.1.430 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › UxaE | 0.51 | 47.0 | 4.10e-01 | 99.7% | 88.1% |
| 2793268 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.50 | 39.0 | 4.21e-01 | 83.8% | 96.3% |
| 1347971 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.50 | 45.0 | 4.45e-01 | 95.3% | 100.0% |