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SRR1747065_scaffold_9_prodigal-single.1__X__X__00267
Bact-VirSRR1747065_scaffold_9_prodigal-single.1__X__X__00267
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-190
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00004.36 best | AAA | 76.9 | 2.90e-21 | 69.1% | 98.5% |
D2
high
residues 197-270
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3whkA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.71 | 58.0 | 5.94e-01 | 98.6% | 93.1% |
| 2ly8A00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.68 | 59.0 | 5.09e-01 | 100.0% | 88.4% |
| 2dznF00 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 56.0 | 5.75e-01 | 100.0% | 97.1% |
| 5ubvA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.67 | 55.0 | 5.65e-01 | 100.0% | 95.8% |
| 2jnsA01 | 1.20.1270.220 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.66 | 48.0 | 4.71e-01 | 77.0% | 77.8% |
| 4a3vB01 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 54.0 | 5.49e-01 | 100.0% | 94.4% |
| 7ekoO01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.64 | 52.0 | 4.21e-01 | 91.9% | 84.4% |
| 4zpxA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 56.0 | 5.21e-01 | 98.6% | 83.7% |
| 3sykA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.64 | 55.0 | 5.19e-01 | 100.0% | 93.3% |
| 2lciA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 45.0 | 3.77e-01 | 78.4% | 90.3% |
| 2x8aA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 53.0 | 5.24e-01 | 98.6% | 88.7% |
| 2c9oB03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 52.0 | 5.02e-01 | 100.0% | 86.7% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 44.0 | 4.29e-01 | 97.3% | 71.1% |
| 2wzfA01 | 1.10.1740.130 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.60 | 46.0 | 4.20e-01 | 100.0% | 61.5% |
| 3uk6A02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 51.0 | 4.95e-01 | 100.0% | 86.7% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.58 | 41.0 | 4.17e-01 | 82.4% | 76.1% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 49.0 | 3.34e-01 | 100.0% | 83.7% |
| 1b72A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.53 | 28.0 | 2.94e-01 | 93.2% | 51.5% |
| 6xgzE01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 36.0 | 2.47e-01 | 70.3% | 66.0% |
| 4fwdA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 44.0 | 4.34e-01 | 97.3% | 93.6% |
ECOD (75)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4595180 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.71 | 60.0 | 5.80e-01 | 98.6% | 82.4% |
| 5036997 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.70 | 60.0 | 5.78e-01 | 100.0% | 83.3% |
| None | — | 0.70 | 60.0 | 3.90e-01 | 98.6% | 21.9% | |
| 4392993 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 58.0 | 5.79e-01 | 100.0% | 90.7% |
| 4963148 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.69 | 56.0 | 5.32e-01 | 100.0% | 74.4% |
| 4916303 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.69 | 53.0 | 5.60e-01 | 94.6% | 96.9% |
| 3810823 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 59.0 | 5.20e-01 | 100.0% | 77.9% |
| 5067203 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 56.0 | 5.73e-01 | 100.0% | 95.7% |
| 4100763 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 60.0 | 5.84e-01 | 100.0% | 90.0% |
| 4020947 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 56.0 | 5.28e-01 | 100.0% | 76.4% |
| 4666971 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 56.0 | 5.60e-01 | 100.0% | 90.7% |
| 3232045 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 56.0 | 5.31e-01 | 100.0% | 77.3% |
| 4537789 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 58.0 | 5.42e-01 | 98.6% | 77.8% |
| 4345957 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 56.0 | 5.66e-01 | 100.0% | 90.7% |
| 3520608 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 55.0 | 5.31e-01 | 100.0% | 80.0% |
| 3605789 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 56.0 | 5.39e-01 | 100.0% | 81.9% |
| 4025426 | 148.1.3.213 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind | 0.67 | 52.0 | 5.56e-01 | 83.8% | 100.0% |
| 3838010 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 54.0 | 5.60e-01 | 100.0% | 94.3% |
| 4929924 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.67 | 55.0 | 5.30e-01 | 100.0% | 80.0% |
| 3734971 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.66 | 55.0 | 5.27e-01 | 100.0% | 80.0% |
| 3877790 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.66 | 57.0 | 5.54e-01 | 100.0% | 85.5% |
| 4395479 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.66 | 54.0 | 5.05e-01 | 100.0% | 71.6% |
| 3336203 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.66 | 54.0 | 5.11e-01 | 100.0% | 75.6% |
| 4946868 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.66 | 54.0 | 5.23e-01 | 100.0% | 80.0% |
| 3250030 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.66 | 54.0 | 5.39e-01 | 98.6% | 89.3% |
| 4989650 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.65 | 55.0 | 5.21e-01 | 100.0% | 77.8% |
| 3610034 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.65 | 53.0 | 5.07e-01 | 100.0% | 76.4% |
| 4267142 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 57.0 | 5.73e-01 | 100.0% | 96.0% |
| 3600972 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 53.0 | 5.12e-01 | 100.0% | 80.0% |
| 3585391 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 56.0 | 5.25e-01 | 100.0% | 91.6% |
| 4027192 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 57.0 | 5.18e-01 | 100.0% | 75.0% |
| 3506783 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 57.0 | 4.89e-01 | 100.0% | 75.8% |
| 3720816 | 148.1.3.212 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 | 0.65 | 57.0 | 5.28e-01 | 100.0% | 76.8% |
| 3385527 | 148.1.3.55 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Mg_chelatase_C | 0.64 | 49.0 | 5.33e-01 | 86.5% | 100.0% |
| 3301182 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.64 | 54.0 | 5.38e-01 | 100.0% | 93.3% |
| 3584100 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 54.0 | 5.41e-01 | 100.0% | 96.0% |
| 3060772 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 50.0 | 4.40e-01 | 85.1% | 60.2% |
| 3744257 | 2.1.1.228 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_bind | 0.63 | 50.0 | 4.87e-01 | 86.5% | 78.8% |
| 4388542 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.63 | 50.0 | 4.56e-01 | 86.5% | 74.0% |
| 4999188 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.63 | 55.0 | 5.43e-01 | 100.0% | 92.5% |
| 3597638 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.63 | 45.0 | 4.44e-01 | 94.6% | 70.0% |
| 3926386 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.62 | 53.0 | 5.07e-01 | 100.0% | 82.4% |
| 4394038 | 148.1.3.3 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PCP_red | 0.62 | 47.0 | 5.20e-01 | 86.5% | 100.0% |
| 3488593 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 54.0 | 5.33e-01 | 98.6% | 91.3% |
| 3475867 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.62 | 49.0 | 4.90e-01 | 86.5% | 94.7% |
| 3305472 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.62 | 53.0 | 4.88e-01 | 100.0% | 73.7% |
| 2627484 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.62 | 49.0 | 4.73e-01 | 86.5% | 76.7% |
| 3322037 | 148.1.3.213 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_bind | 0.62 | 49.0 | 5.06e-01 | 85.1% | 94.3% |
| 3931002 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 52.0 | 4.76e-01 | 100.0% | 79.0% |
| 3171757 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.62 | 52.0 | 4.73e-01 | 100.0% | 70.0% |
| 4932585 | 148.1.3.50 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid | 0.61 | 54.0 | 5.44e-01 | 98.6% | 100.0% |
| 4125267 | 148.1.3.50 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid | 0.61 | 54.0 | 4.86e-01 | 98.6% | 88.0% |
| 3699521 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 53.0 | 4.91e-01 | 98.6% | 92.6% |
| 5051292 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 49.0 | 4.89e-01 | 87.8% | 96.0% |
| 3923423 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.60 | 52.0 | 4.90e-01 | 100.0% | 78.5% |
| 4041830 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.60 | 47.0 | 4.94e-01 | 85.1% | 95.4% |
| 3600710 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.60 | 44.0 | 3.08e-01 | 78.4% | 87.3% |
| 4996564 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.60 | 47.0 | 4.48e-01 | 83.8% | 82.4% |
| 5042563 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.59 | 47.0 | 4.46e-01 | 83.8% | 81.2% |
| 4507907 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.59 | 47.0 | 4.53e-01 | 85.1% | 83.5% |
| 3791599 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 50.0 | 4.75e-01 | 100.0% | 87.8% |
| 4623181 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.59 | 46.0 | 4.65e-01 | 85.1% | 84.0% |
| 3639727 | 148.1.3.206 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31015 | 0.59 | 50.0 | 4.48e-01 | 100.0% | 83.6% |
| 4970852 | 148.1.3.18 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C | 0.58 | 50.0 | 4.68e-01 | 100.0% | 76.6% |
| 4307412 | 181.1.1.27 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › ATP-cone | 0.58 | 46.0 | 4.44e-01 | 85.1% | 84.7% |
| 4975172 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.58 | 47.0 | 4.41e-01 | 87.8% | 72.2% |
| 3955817 | 4312.1.1.3 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin | 0.58 | 44.0 | 4.12e-01 | 85.1% | 91.8% |
| 3427839 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.58 | 46.0 | 4.40e-01 | 85.1% | 83.5% |
| 5051773 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.58 | 46.0 | 4.34e-01 | 87.8% | 85.6% |
| 4954174 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.57 | 44.0 | 4.21e-01 | 85.1% | 83.3% |
| 3455739 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.57 | 46.0 | 4.34e-01 | 87.8% | 81.1% |
| 5017582 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 49.0 | 4.56e-01 | 98.6% | 81.1% |
| 4945467 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 47.0 | 4.65e-01 | 98.6% | 97.5% |
| 5044307 | 103.2.1.0 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone | 0.54 | 45.0 | 4.30e-01 | 91.9% | 95.3% |
| 3604586 | 632.11.1.16 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › PF27356 | 0.54 | 37.0 | 3.93e-01 | 97.3% | 81.5% |