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SRR1747065_scaffold_9_prodigal-single.1__X__X__00283

Bact-Vir

SRR1747065_scaffold_9_prodigal-single.1__X__X__00283

Identity

Kingdom:
phage

Quality

81.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-69
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.71 46.0 4.79e-01 90.0% 73.3%
3colB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.68 53.0 3.60e-01 84.0% 43.1%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.67 52.0 4.17e-01 88.0% 51.9%
3ikhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 48.0 2.97e-01 100.0% 13.3%
3pfyA02 6.10.20.180 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.67 53.0 5.10e-01 100.0% 78.9%
1f20A01 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.66 54.0 3.73e-01 100.0% 27.6%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.66 59.0 4.71e-01 100.0% 78.4%
2g5gX02 1.10.8.760 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 0.63 47.0 4.54e-01 98.0% 69.5%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.63 43.0 3.98e-01 78.0% 56.2%
2r0yA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 48.0 3.80e-01 90.0% 42.1%
1umqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 40.0 3.81e-01 78.0% 55.0%
2f4lA03 3.10.28.20 Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains 0.60 50.0 4.28e-01 92.0% 88.7%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.60 45.0 4.38e-01 80.0% 75.0%
3i9v201 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.60 42.0 3.90e-01 88.0% 55.6%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.59 50.0 4.29e-01 92.0% 87.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.59 50.0 4.35e-01 96.0% 66.7%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.58 48.0 3.55e-01 100.0% 70.9%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 39.0 3.91e-01 74.0% 71.7%
1is8A01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.56 43.0 4.16e-01 88.0% 76.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4286831 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 52.0 5.07e-01 78.0% 63.6%
5029231 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.73 56.0 3.16e-01 82.0% 9.0%
4024033 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.71 53.0 5.13e-01 84.0% 72.7%
3740183 101.1.15.3 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.68 59.0 4.70e-01 100.0% 51.4%
4600245 3640.1.1.1 ↗ alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp 0.67 54.0 4.68e-01 88.0% 70.9%
4025782 541.1.1.4 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Radial_spoke 0.67 50.0 5.02e-01 80.0% 94.0%
3850122 541.1.1.4 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Radial_spoke 0.66 49.0 4.66e-01 80.0% 80.0%
3268188 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 46.0 5.12e-01 74.0% 97.5%
4169238 6130.1.1.1 ↗ alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N 0.64 43.0 3.73e-01 70.0% 46.7%
4935591 2498.1.1.161 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › eCIS_core 0.62 47.0 3.53e-01 82.0% 43.8%
3498240 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.60 51.0 3.19e-01 92.0% 19.6%
4356636 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.60 49.0 4.38e-01 88.0% 71.4%
3032802 152.1.1.1 ↗ alpha arrays › RPB6/omega subunit-like › RPB6/omega subunit-like › RPB6 › RNA_pol_Rpb6 0.59 49.0 4.66e-01 98.0% 76.3%
4603339 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.57 46.0 3.83e-01 90.0% 94.4%
D2 medium residues 1-12_132-198
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h4nA00 2.60.40.3750 Mainly Beta › Sandwich › Immunoglobulin-like › 0.68 39.0 4.36e-01 100.0% 72.6%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 43.0 3.93e-01 100.0% 49.5%
3r5dA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 58.0 4.97e-01 100.0% 68.2%
2rijA01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 54.0 4.37e-01 100.0% 62.7%
2drvA00 3.30.1960.10 Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like 0.63 38.0 2.92e-01 100.0% 24.6%
2x9zA02 2.60.40.1140 Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain 0.61 36.0 3.25e-01 100.0% 40.7%
3x17A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 42.0 3.86e-01 100.0% 55.9%
5ijaA00 3.40.50.1450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like 0.60 46.0 3.88e-01 87.3% 79.1%
4ecnA02 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.59 38.0 3.37e-01 100.0% 42.6%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.58 49.0 4.89e-01 100.0% 90.5%
6v55A03 2.60.220.50 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › 0.56 44.0 3.57e-01 89.9% 61.4%
1kshB00 2.70.50.40 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit 0.53 42.0 3.45e-01 84.8% 88.7%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.52 42.0 2.97e-01 100.0% 27.3%
1pmhX00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 40.0 3.00e-01 100.0% 35.0%
3ffyA00 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.51 40.0 3.67e-01 88.6% 98.2%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3237567 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.71 39.0 4.58e-01 100.0% 78.2%
3932817 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.69 48.0 3.98e-01 100.0% 42.2%
3303751 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 40.0 3.35e-01 98.7% 40.0%
3892007 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.61 38.0 3.06e-01 100.0% 32.3%
1489706 11.1.1.48 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N 0.60 42.0 3.87e-01 100.0% 56.4%
3472406 5.1.12.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains 0.60 40.0 2.68e-01 100.0% 18.3%
5049285 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 37.0 2.65e-01 100.0% 21.3%
3586980 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 43.0 3.67e-01 100.0% 47.7%
4333360 3610.1.1.1 ↗ a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M 0.57 46.0 3.82e-01 100.0% 48.0%
3579723 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 40.0 4.37e-01 100.0% 92.3%
5066749 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.56 42.0 3.07e-01 83.5% 92.2%
5032499 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 41.0 3.00e-01 88.6% 61.2%
3493761 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.51 36.0 2.89e-01 100.0% 34.7%
D3 medium residues 77-131
PDB
Domain cluster: representative
CATH (63)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 53.0 4.62e-01 72.7% 54.2%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 4.02e-01 70.9% 89.3%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.70 49.0 2.96e-01 74.5% 12.3%
3l4gC03 1.10.10.2330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 48.0 4.94e-01 98.2% 83.0%
1xkpC00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.66 45.0 3.44e-01 70.9% 47.6%
4ymhD00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 56.0 3.74e-01 100.0% 27.4%
2pt7G02 3.30.1370.180 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 43.0 4.02e-01 70.9% 100.0%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.63 50.0 3.62e-01 87.3% 94.0%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.62 53.0 3.68e-01 100.0% 40.3%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 42.0 3.43e-01 72.7% 78.0%
2zbiA02 3.30.70.2120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 45.0 3.58e-01 80.0% 94.5%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 51.0 3.34e-01 100.0% 24.1%
3gmfA02 1.10.40.110 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.59 44.0 3.65e-01 81.8% 58.3%
5nl9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 50.0 4.33e-01 98.2% 61.9%
2kloA00 1.10.10.1420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA replication factor Cdt1, C-terminal WH domain 0.59 51.0 3.85e-01 100.0% 42.8%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 49.0 3.41e-01 100.0% 41.9%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.88e-01 100.0% 51.0%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 4.13e-01 98.2% 64.1%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 4.45e-01 100.0% 70.2%
5xgbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.58 45.0 3.20e-01 87.3% 67.6%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 41.0 3.10e-01 74.5% 55.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.06e-01 100.0% 52.4%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.57 46.0 4.15e-01 98.2% 62.0%
5llwA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 43.0 3.34e-01 85.5% 81.8%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 3.77e-01 100.0% 48.5%
2f5gA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.57 42.0 3.23e-01 80.0% 70.0%
1lj9B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 46.0 3.47e-01 100.0% 35.9%
6eibD00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 45.0 3.29e-01 87.3% 76.3%
2i0zA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.10e-01 100.0% 23.8%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.97e-01 98.2% 62.5%
6zxbA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 44.0 3.29e-01 85.5% 81.2%
3zieD00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.56 49.0 4.36e-01 100.0% 86.6%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 45.0 3.35e-01 89.1% 81.2%
1kafA00 3.90.1150.20 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain 0.56 40.0 3.17e-01 74.5% 100.0%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 4.46e-01 96.4% 89.7%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 43.0 3.59e-01 89.1% 88.3%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.64e-01 100.0% 50.0%
2e9yB00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.55 46.0 2.92e-01 96.4% 72.1%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.74e-01 100.0% 57.0%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 44.0 3.08e-01 100.0% 37.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 46.0 3.28e-01 94.5% 88.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.75e-01 100.0% 54.7%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 47.0 3.25e-01 96.4% 37.3%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 47.0 3.21e-01 96.4% 36.3%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.51e-01 100.0% 44.2%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.61e-01 85.5% 70.9%
1fx2A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 46.0 3.06e-01 98.2% 26.0%
2fgcA03 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.53 36.0 3.34e-01 100.0% 52.6%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.53 40.0 3.59e-01 81.8% 66.2%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.70e-01 100.0% 52.4%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 45.0 4.31e-01 96.4% 85.9%
3ajdA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.53 36.0 3.55e-01 100.0% 66.7%
2vqcA00 1.10.10.1470 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like 0.53 46.0 4.24e-01 98.2% 82.9%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.79e-01 100.0% 60.7%
2xigA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 45.0 3.90e-01 100.0% 97.8%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.52 46.0 4.26e-01 100.0% 81.4%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 44.0 3.06e-01 96.4% 36.4%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 43.0 3.97e-01 100.0% 72.0%
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 39.0 3.50e-01 100.0% 58.5%
2e9hA01 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.51 38.0 3.16e-01 100.0% 42.5%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.50 34.0 3.20e-01 98.2% 54.1%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 43.0 3.55e-01 96.4% 60.4%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.50 39.0 3.50e-01 89.1% 95.1%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4119447 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.73 53.0 3.02e-01 76.4% 19.8%
4030596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.18e-01 96.4% 70.6%
3256435 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 46.0 2.74e-01 70.9% 21.0%
5063407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 55.0 5.15e-01 98.2% 72.9%
5030899 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.97e-01 100.0% 71.4%
4934328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.95e-01 100.0% 71.4%
4976066 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.04e-01 100.0% 78.8%
4933315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.71e-01 100.0% 63.7%
5001357 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.50e-01 100.0% 68.0%
5033207 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 3.37e-01 70.9% 42.4%
3319155 101.1.4.12 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.63 56.0 3.53e-01 100.0% 20.0%
3167871 109.4.1.292 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like 0.63 52.0 3.00e-01 90.9% 19.8%
3347818 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.63 52.0 4.82e-01 98.2% 80.0%
3611229 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 3.32e-01 100.0% 19.6%
3390936 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.62 52.0 4.41e-01 100.0% 54.0%
3958184 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.62 46.0 3.36e-01 80.0% 91.0%
3717029 109.4.1.116 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIH_assoc 0.62 49.0 2.87e-01 90.9% 25.3%
3820802 101.1.2.529 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7599 0.62 52.0 4.28e-01 100.0% 57.3%
4476428 304.20.1.0 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain 0.61 46.0 3.23e-01 81.8% 85.7%
4458458 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.61 53.0 3.34e-01 100.0% 19.3%
4547498 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 2.77e-01 76.4% 18.9%
3727390 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 42.0 2.56e-01 76.4% 20.7%
4008061 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.64e-01 98.2% 74.7%
4937481 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.81e-01 100.0% 44.5%
3468120 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.59 47.0 4.16e-01 100.0% 58.8%
5049103 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.67e-01 100.0% 73.3%
3919567 101.1.2.178 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.59 49.0 4.18e-01 96.4% 70.5%
3298593 109.4.1.43 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP 0.58 47.0 3.04e-01 90.9% 20.0%
3441807 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.58 51.0 4.43e-01 100.0% 69.4%
5048954 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.97e-01 100.0% 50.4%
3604748 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 3.33e-01 98.2% 27.0%
4579829 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.58 42.0 3.21e-01 81.8% 85.3%
4024318 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 50.0 4.40e-01 100.0% 72.9%
4991498 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.55e-01 100.0% 77.1%
4928345 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 46.0 4.43e-01 98.2% 82.6%
4407982 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.57 39.0 3.42e-01 70.9% 92.5%
5028329 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 49.0 4.50e-01 98.2% 78.7%
3388122 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 4.13e-01 98.2% 58.9%
3594005 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.52e-01 100.0% 35.2%
3195581 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.56 47.0 3.04e-01 100.0% 21.1%
3987638 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.56 45.0 3.40e-01 92.7% 87.3%
4947165 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 3.40e-01 100.0% 30.6%
3394692 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 49.0 3.96e-01 100.0% 60.0%
3901409 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.56 46.0 4.02e-01 100.0% 58.9%
3973648 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 46.0 3.03e-01 92.7% 65.0%
5044029 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.55 48.0 4.19e-01 98.2% 67.9%
3830419 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.11e-01 96.4% 65.0%
3716118 70.3.1.0 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like 0.55 46.0 2.96e-01 100.0% 73.1%
3899864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.80e-01 98.2% 61.0%
3638956 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.55 48.0 3.52e-01 100.0% 43.3%
4942265 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.99e-01 96.4% 71.8%
3541292 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.75e-01 96.4% 59.0%
3785110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 47.0 3.60e-01 100.0% 64.4%
5048344 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 44.0 4.11e-01 90.9% 94.3%
3467284 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.54 47.0 3.85e-01 100.0% 52.8%
3487542 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.54 48.0 3.78e-01 100.0% 48.7%
3936578 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 47.0 3.06e-01 96.4% 29.4%
3268328 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 47.0 3.06e-01 96.4% 29.4%
3412446 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.54 47.0 3.06e-01 98.2% 27.5%
3334401 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.54 46.0 3.04e-01 100.0% 21.2%
4029375 101.1.2.663 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7602 0.54 38.0 3.32e-01 76.4% 87.8%
3579195 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.54 47.0 4.38e-01 100.0% 78.6%
3710097 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 3.46e-01 100.0% 45.7%
3632795 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 43.0 3.48e-01 90.9% 93.6%
5049534 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.85e-01 92.7% 76.5%
None — 0.53 46.0 2.98e-01 96.4% 28.2%
3493298 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.53 39.0 2.87e-01 83.6% 84.1%
4659996 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.52 44.0 2.91e-01 96.4% 27.6%
4372180 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.52 40.0 3.11e-01 89.1% 86.0%
4933807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 3.96e-01 98.2% 77.6%
3573598 101.1.2.154 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.52 44.0 3.60e-01 100.0% 50.0%
5082110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 4.14e-01 98.2% 88.3%
3360854 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.51 41.0 3.38e-01 98.2% 48.3%
3402524 101.1.2.186 ↗ alpha arrays › HTH › HTH › winged helix domain › ASH2L-like_WH 0.51 42.0 3.64e-01 98.2% 75.8%
4026719 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 3.43e-01 100.0% 46.4%
4999182 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.71e-01 92.7% 78.7%