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STL6-S73_scaffold_1_prodigal-single.1__X__X__00020
Bact-VirSTL6-S73_scaffold_1_prodigal-single.1__X__X__00020
Identity
- Kingdom:
- phage
Quality
93.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-100
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m3qA01 | 3.30.310.40 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.60 | 33.0 | 3.51e-01 | 82.0% | 59.6% |
| 1gd5A00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.56 | 39.0 | 3.65e-01 | 72.0% | 92.3% |
| 4b08A01 | 2.40.50.730 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 31.0 | 3.35e-01 | 70.0% | 65.4% |
| 3k7uC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 36.0 | 3.67e-01 | 83.0% | 72.4% |
| 4bgjA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 37.0 | 3.55e-01 | 74.0% | 91.5% |
| 1hdhA02 | 3.30.1120.10 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 29.0 | 3.22e-01 | 81.0% | 70.1% |
| 1ocsA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 35.0 | 3.31e-01 | 73.0% | 93.2% |
| 3cawA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 34.0 | 3.55e-01 | 70.0% | 89.0% |
| 2g7jA00 | 3.90.1150.40 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Protein of unknown function DUF2002 | 0.50 | 39.0 | 3.80e-01 | 84.0% | 85.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003276 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.63 | 30.0 | 3.64e-01 | 82.0% | 69.2% |
| 4975474 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.62 | 29.0 | 3.50e-01 | 78.0% | 66.2% |
| 3889863 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 40.0 | 3.81e-01 | 75.0% | 98.3% |
| 3468562 | 331.1.1.5 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › OGG_N | 0.54 | 33.0 | 3.54e-01 | 82.0% | 68.9% |
| 3730190 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 37.0 | 3.45e-01 | 71.0% | 85.4% |
| 3892091 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 29.0 | 2.34e-01 | 93.0% | 27.4% |
| 3708814 | 5.1.4.102 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_3 | 0.54 | 38.0 | 2.77e-01 | 74.0% | 28.6% |
| 3546312 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.54 | 37.0 | 3.59e-01 | 71.0% | 95.5% |
| 3787501 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 36.0 | 3.33e-01 | 70.0% | 95.7% |
| 2429397 | 214.1.1.4 ↗ | a+b two layers › SH2 › SH2 › SH2 › MelC1 | 0.52 | 37.0 | 4.05e-01 | 75.0% | 96.2% |
| 4680096 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.51 | 35.0 | 3.89e-01 | 87.0% | 88.7% |
| 3741777 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.51 | 38.0 | 3.52e-01 | 80.0% | 94.8% |
D2
medium
residues 101-165
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.71 | 46.0 | 2.95e-01 | 83.1% | 14.0% |
| 4mc3A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.70 | 41.0 | 2.69e-01 | 83.1% | 13.2% |
| 3kb9A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.68 | 45.0 | 2.88e-01 | 83.1% | 13.2% |
| 4lzjA02 | 1.10.8.1080 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 43.0 | 4.03e-01 | 72.3% | 53.2% |
| 1oaiA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 45.0 | 4.75e-01 | 95.4% | 79.7% |
| 8d7fC01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.64 | 47.0 | 3.03e-01 | 83.1% | 16.5% |
| 1wivA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 39.0 | 3.77e-01 | 100.0% | 57.5% |
| 1qrvA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.59 | 36.0 | 3.51e-01 | 84.6% | 53.4% |
| 1v92A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 38.0 | 4.37e-01 | 98.5% | 93.5% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.59 | 40.0 | 4.52e-01 | 92.3% | 100.0% |
| 7y9hB01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 48.0 | 3.17e-01 | 100.0% | 41.2% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.55 | 41.0 | 3.49e-01 | 80.0% | 79.1% |
| 2e6oA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 38.0 | 3.47e-01 | 73.8% | 54.0% |
| 1k1fA00 | 4.10.280.30 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Bcr-Abl oncoprotein oligomerisation domain | 0.53 | 32.0 | 3.27e-01 | 98.5% | 60.6% |
| 1g03A00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.53 | 38.0 | 3.15e-01 | 80.0% | 75.4% |
| 2vqeM01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.52 | 38.0 | 3.73e-01 | 80.0% | 88.7% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.52 | 43.0 | 3.88e-01 | 93.8% | 96.7% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 34.0 | 3.26e-01 | 95.4% | 57.7% |
| 3lcvB01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.50 | 36.0 | 3.83e-01 | 80.0% | 86.0% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4557831 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.75 | 37.0 | 2.73e-01 | 100.0% | 19.4% |
| 4219326 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.64 | 54.0 | 3.47e-01 | 100.0% | 55.1% |
| 5047497 | 1045.1.1.0 ↗ | alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 | 0.63 | 45.0 | 4.58e-01 | 76.9% | 100.0% |
| 3590686 | 3754.1.1.1 ↗ | alpha bundles › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Bacterial cell wall synthesis membrane enzyme MraY-related › Glycos_transf_4 | 0.62 | 51.0 | 3.41e-01 | 100.0% | 56.1% |
| 1710231 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.61 | 46.0 | 4.12e-01 | 83.1% | 57.7% |
| 4015710 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 45.0 | 4.16e-01 | 81.5% | 90.6% |
| 3997192 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.60 | 44.0 | 4.06e-01 | 100.0% | 61.3% |
| 5030811 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.60 | 43.0 | 3.54e-01 | 96.9% | 42.6% |
| 4937602 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.60 | 41.0 | 3.25e-01 | 100.0% | 36.2% |
| 3096 | 103.1.1.14 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_4 | 0.59 | 38.0 | 4.37e-01 | 98.5% | 93.5% |
| 4021017 | 3266.1.1.1 ↗ | alpha arrays › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1 C-terminal domain › Rap1_C | 0.58 | 39.0 | 3.97e-01 | 83.1% | 70.8% |
| 5031436 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.57 | 42.0 | 3.86e-01 | 95.4% | 60.0% |
| 3932835 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 41.0 | 3.65e-01 | 78.5% | 99.0% |
| 3954659 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.57 | 46.0 | 3.21e-01 | 98.5% | 32.7% |
| 4838076 | 2007.1.19.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Acyl_transf_1 | 0.56 | 42.0 | 3.62e-01 | 83.1% | 51.9% |
| 3499057 | 304.137.1.0 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain | 0.54 | 44.0 | 3.25e-01 | 96.9% | 69.7% |
| 3614319 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 36.0 | 3.53e-01 | 70.8% | 91.4% |
| 4262340 | 375.1.1.203 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › tRNA-synt_1, tRNA-synt_1g | 0.51 | 43.0 | 2.69e-01 | 100.0% | 40.2% |
| 3757366 | 190.1.1.3 ↗ | alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 | 0.50 | 31.0 | 2.96e-01 | 83.1% | 48.8% |
| 4353388 | 2485.1.1.47 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_11 | 0.50 | 37.0 | 2.89e-01 | 76.9% | 88.9% |