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STL6-S73_scaffold_1_prodigal-single.1__X__X__00106
Bact-VirSTL6-S73_scaffold_1_prodigal-single.1__X__X__00106
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-83
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yjsA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.77 | 59.0 | 3.78e-01 | 82.1% | 85.7% |
| 2vo9A01 | 3.30.1380.10 | Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › | 0.66 | 57.0 | 4.26e-01 | 94.6% | 84.2% |
| 3k59A07 | 1.10.132.60 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain | 0.65 | 50.0 | 3.76e-01 | 83.9% | 38.0% |
| 4a15A03 | 1.10.275.40 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.65 | 46.0 | 3.42e-01 | 73.2% | 70.7% |
| 3lysA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.65 | 45.0 | 3.71e-01 | 73.2% | 45.7% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.58 | 46.0 | 3.76e-01 | 85.7% | 76.5% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 46.0 | 3.31e-01 | 91.1% | 54.2% |
| 2r2iA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.53 | 43.0 | 3.65e-01 | 92.9% | 68.0% |
| 3phuA01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.51 | 38.0 | 2.80e-01 | 80.4% | 62.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3274479 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.68 | 48.0 | 3.84e-01 | 75.0% | 99.1% |
| 3340118 | 4110.1.1.1 ↗ | alpha arrays › UraD-like › UraD-like › UraD-like › OHCU_decarbox | 0.65 | 55.0 | 3.96e-01 | 96.4% | 72.1% |
| 4568066 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.64 | 46.0 | 2.94e-01 | 75.0% | 74.6% |
| 3432349 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.64 | 50.0 | 3.91e-01 | 83.9% | 40.0% |
D2
high
residues 84-174
Domain cluster:
rep: MZ326860.1__QYW02176.1__CPT_Sonora_075__00073__D22-133
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cv8A00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.73 | 56.0 | 4.50e-01 | 81.3% | 93.1% |
| 3bbaA00 | 3.90.70.50 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) | 0.70 | 54.0 | 3.93e-01 | 82.4% | 92.3% |
| 4g29A00 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.65 | 54.0 | 4.46e-01 | 91.2% | 80.7% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 49.0 | 3.92e-01 | 83.5% | 99.5% |
| 2i5tA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.59 | 41.0 | 3.37e-01 | 72.5% | 79.3% |
| 3i3tA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.58 | 44.0 | 3.07e-01 | 80.2% | 98.7% |
| 3zpeA00 | 2.60.90.50 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › | 0.58 | 48.0 | 4.15e-01 | 89.0% | 71.7% |
| 3h96C00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 41.0 | 3.63e-01 | 75.8% | 64.5% |
| 2veoA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.56 | 39.0 | 2.74e-01 | 72.5% | 46.7% |
| 1na6A01 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.55 | 43.0 | 3.55e-01 | 85.7% | 97.7% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.54 | 36.0 | 3.61e-01 | 90.1% | 66.7% |
| 6j0qA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.54 | 44.0 | 4.24e-01 | 92.3% | 100.0% |
| 2imlA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 37.0 | 3.48e-01 | 84.6% | 57.5% |
| 1vl7A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 38.0 | 3.34e-01 | 94.5% | 49.6% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.52 | 41.0 | 4.39e-01 | 86.8% | 100.0% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 36.0 | 3.17e-01 | 89.0% | 46.9% |
| 4bi3A01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.50 | 34.0 | 3.42e-01 | 89.0% | 69.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4984815 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.80 | 65.0 | 5.18e-01 | 85.7% | 76.5% |
| 5023597 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.79 | 58.0 | 4.74e-01 | 76.9% | 72.5% |
| 5084081 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.76 | 59.0 | 4.58e-01 | 82.4% | 72.8% |
| 5078205 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.73 | 56.0 | 4.53e-01 | 81.3% | 68.8% |
| 4945617 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.73 | 59.0 | 4.81e-01 | 85.7% | 66.9% |
| 5008468 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.71 | 53.0 | 4.34e-01 | 78.0% | 69.4% |
| 4945365 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.70 | 60.0 | 4.89e-01 | 92.3% | 100.0% |
| 2532980 | 219.1.1.53 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin | 0.69 | 54.0 | 3.94e-01 | 84.6% | 60.2% |
| 5012604 | 219.1.1.51 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 | 0.67 | 51.0 | 3.90e-01 | 81.3% | 91.0% |
| 4099186 | 219.1.1.21 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C58 | 0.65 | 51.0 | 4.01e-01 | 83.5% | 99.5% |
| 5029261 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.65 | 54.0 | 4.59e-01 | 90.1% | 90.0% |
| 3710596 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 45.0 | 3.82e-01 | 75.8% | 83.4% |
| 3168711 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.60 | 46.0 | 3.90e-01 | 84.6% | 58.5% |
| 5067070 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.58 | 41.0 | 3.56e-01 | 98.9% | 47.9% |
| 3699932 | 2003.1.5.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TPMT | 0.58 | 40.0 | 3.00e-01 | 73.6% | 34.9% |
| 1069946 | 219.1.1.52 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Tae4 | 0.56 | 42.0 | 3.50e-01 | 80.2% | 91.4% |
| 3977220 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.54 | 42.0 | 3.17e-01 | 87.9% | 67.3% |
| 4947363 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.53 | 38.0 | 3.02e-01 | 74.7% | 41.6% |
| 4606765 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.53 | 44.0 | 4.14e-01 | 91.2% | 83.6% |
| 3063143 | 2498.1.1.94 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF26320 | 0.52 | 36.0 | 2.34e-01 | 72.5% | 33.7% |
| 3734667 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.33e-01 | 86.8% | 90.6% |
| 5049519 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.51 | 36.0 | 2.83e-01 | 74.7% | 38.2% |
| 3324335 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.50 | 35.0 | 2.97e-01 | 73.6% | 79.4% |