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STL6-S73_scaffold_1_prodigal-single.1__X__X__00233

Bact-Vir

STL6-S73_scaffold_1_prodigal-single.1__X__X__00233

Identity

Kingdom:
phage

Quality

69.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-107
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ztgA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.62 33.0 3.13e-01 97.3% 40.2%
6qpwA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 3.19e-01 76.0% 68.6%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.54 38.0 3.42e-01 77.3% 90.5%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 38.0 3.34e-01 77.3% 86.0%
3nzkA01 3.30.230.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 0.51 38.0 3.22e-01 80.0% 75.0%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3701455 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 42.0 4.87e-01 97.3% 98.2%
3401929 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 29.0 3.72e-01 93.3% 85.0%
3588036 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 31.0 3.56e-01 90.7% 69.1%
3512692 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 32.0 3.12e-01 100.0% 49.4%
5055673 7056.1.1.0 few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan 0.55 27.0 3.35e-01 94.7% 82.5%
3550281 376.1.1.66 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_16 0.53 34.0 3.47e-01 100.0% 65.3%
3576504 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 29.0 3.25e-01 84.0% 69.1%
3820673 377.1.1.47 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.53 36.0 3.88e-01 89.3% 90.0%
3309792 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.51 36.0 3.85e-01 81.3% 93.3%
3803854 376.1.2.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_2 0.50 35.0 3.84e-01 92.0% 100.0%
D2 high residues 127-234
PDB
D3 medium residues 332-482
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13306.13 best LRR_5 28.4 1.90e-06 82.1% 76.4%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h09D00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.82 77.0 5.62e-01 99.3% 45.1%
4fs7A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.82 78.0 5.61e-01 100.0% 59.3%
4gt6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.81 77.0 5.57e-01 100.0% 69.9%
4fd0A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.81 76.0 5.91e-01 99.3% 63.6%
4cp6A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.81 75.0 5.35e-01 98.7% 43.2%
4nkhE00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.78 74.0 6.19e-01 100.0% 75.3%
3sb4A02 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.76 64.0 6.42e-01 88.7% 93.5%
1oznA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.75 70.0 5.61e-01 100.0% 71.8%
4u08A00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.75 69.0 5.04e-01 100.0% 54.2%
1xeuA01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.75 65.0 6.16e-01 98.0% 78.3%
3bz5A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.74 70.0 5.14e-01 100.0% 52.7%
2v9sA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.73 67.0 6.02e-01 100.0% 84.5%
1xkuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 68.0 5.28e-01 100.0% 63.3%
2z80B00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.72 67.0 5.19e-01 100.0% 62.2%
4rcwA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 66.0 5.64e-01 100.0% 77.4%
4ezgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 64.0 6.02e-01 99.3% 80.0%
4ojuA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 61.0 6.29e-01 89.4% 97.2%
2id5A01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.71 65.0 4.87e-01 100.0% 54.6%
4mxnB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.70 64.0 5.57e-01 99.3% 85.0%
3wpcA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.70 65.0 4.08e-01 100.0% 21.4%
4cnmA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.69 64.0 5.15e-01 100.0% 69.6%
2wfhA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.68 62.0 5.86e-01 100.0% 87.3%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5033803 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 80.0 6.90e-01 98.0% 77.7%
4148563 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 80.0 5.41e-01 98.0% 36.6%
2576217 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.85 81.0 7.06e-01 100.0% 91.6%
1281087 207.1.1.21 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_5 0.82 78.0 5.61e-01 100.0% 59.3%
3260136 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.75 70.0 5.28e-01 100.0% 55.9%
5052324 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.75 70.0 4.87e-01 99.3% 37.1%
3428950 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.75 69.0 5.06e-01 100.0% 54.5%
4065296 207.1.1.159 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8, LRR_14 0.75 69.0 5.49e-01 99.3% 58.3%
3617496 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.75 69.0 5.74e-01 100.0% 72.9%
5052837 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.74 68.0 5.83e-01 100.0% 64.3%
3624101 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.74 69.0 5.41e-01 100.0% 62.3%
4377081 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.74 69.0 5.88e-01 99.3% 73.6%
3312189 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.74 68.0 5.22e-01 100.0% 57.3%
3880063 207.1.1.132 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 0.74 69.0 5.68e-01 99.3% 62.0%
3861251 207.1.1.130 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8 0.74 69.0 5.64e-01 100.0% 73.8%
3808836 207.1.1.186 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_6, LRR_8, LRR_14 0.74 68.0 4.95e-01 100.0% 48.7%
4360578 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.74 68.0 4.52e-01 100.0% 33.4%
3266368 207.1.1.144 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4 0.73 68.0 5.69e-01 100.0% 77.6%
3936552 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.73 68.0 5.75e-01 100.0% 69.8%
3298751 207.1.1.147 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8, LRR_14 0.73 67.0 5.10e-01 100.0% 54.9%
3868949 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.73 67.0 4.86e-01 100.0% 36.9%
3779117 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.73 67.0 4.72e-01 100.0% 32.9%
3715581 207.1.1.56 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4,LRR_6,LRR_8 0.73 68.0 5.18e-01 100.0% 52.5%
4944170 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.73 67.0 5.11e-01 100.0% 55.1%
3485451 207.1.1.144 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4 0.73 68.0 5.69e-01 99.3% 62.9%
4392821 207.1.1.237 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_5, LRR_8, LRR_14 0.73 67.0 4.52e-01 100.0% 35.1%
3232491 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.73 68.0 5.19e-01 100.0% 57.3%
3425279 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.73 68.0 4.92e-01 100.0% 58.2%
3755202 207.1.1.132 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8 0.73 68.0 5.90e-01 100.0% 87.0%
3752080 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.72 67.0 5.28e-01 99.3% 50.0%
4374325 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.72 66.0 5.13e-01 100.0% 52.1%
4086560 207.1.1.102 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.72 66.0 5.33e-01 100.0% 59.0%
3701695 207.1.1.56 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4,LRR_6,LRR_8 0.72 66.0 5.11e-01 100.0% 64.5%
3499040 207.1.1.55 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRR_8 0.72 66.0 5.25e-01 100.0% 76.3%
3592635 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.72 65.0 5.69e-01 98.7% 80.4%
3771525 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 63.0 5.18e-01 95.4% 55.9%
3270103 207.1.1.147 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8, LRR_14 0.71 65.0 5.27e-01 100.0% 55.8%
3257932 207.1.1.137 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_4, LRR_8 0.71 65.0 4.84e-01 100.0% 42.1%
3429088 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.71 66.0 5.71e-01 100.0% 92.4%
3867420 207.1.1.159 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1, LRR_6, LRR_8, LRR_14 0.70 65.0 5.16e-01 100.0% 75.3%
3468056 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.70 62.0 5.56e-01 96.7% 68.4%
3451088 207.1.1.100 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8+LRR_14 0.70 65.0 5.81e-01 100.0% 100.0%
3667453 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.70 64.0 4.46e-01 100.0% 42.5%
3446346 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.69 63.0 5.18e-01 100.0% 70.5%
3460961 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.69 63.0 5.02e-01 100.0% 68.7%
3683119 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.69 63.0 4.82e-01 100.0% 58.6%
3684326 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.69 63.0 5.41e-01 100.0% 85.1%
3458269 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 62.0 5.29e-01 100.0% 84.9%
3670867 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 61.0 6.02e-01 96.0% 92.5%
3451015 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.68 62.0 4.42e-01 100.0% 47.8%
3460109 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.67 61.0 5.74e-01 100.0% 87.0%
3669190 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.67 61.0 4.41e-01 100.0% 46.2%
4236680 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.66 60.0 4.31e-01 100.0% 53.6%