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STL6-S73_scaffold_1_prodigal-single.1__X__X__00381

Bact-Vir

STL6-S73_scaffold_1_prodigal-single.1__X__X__00381

Identity

Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 127-246
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2akjA03 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 35.0 3.52e-01 93.3% 56.8%
1p57B02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 38.0 3.87e-01 78.3% 68.6%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 39.0 4.16e-01 79.2% 81.9%
1m9uA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 40.0 3.94e-01 78.3% 91.7%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 35.0 3.53e-01 70.0% 97.6%
2wstA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.51 37.0 3.33e-01 75.8% 85.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4936008 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.58 38.0 4.14e-01 85.0% 82.1%
2756431 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.58 32.0 3.55e-01 70.8% 66.3%
3353869 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 37.0 4.26e-01 89.2% 100.0%
4126826 1.1.7.70 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_GLAA-B_II 0.53 34.0 3.83e-01 78.3% 85.6%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.53 34.0 3.59e-01 80.0% 71.6%
3251895 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 29.0 3.20e-01 73.3% 65.3%
4237287 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 36.0 3.68e-01 80.0% 72.5%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 30.0 3.32e-01 70.8% 72.2%
3507295 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.51 28.0 3.00e-01 71.7% 60.0%
D2 medium residues 1-90
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF25165.1 best DUF7828 30.6 2.90e-07 78.9% 66.7%
PF25164.2 CoiA_N 46.9 2.20e-12 47.8% 74.0%
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 35.0 3.84e-01 86.7% 69.0%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4627062 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.68 51.0 4.05e-01 78.9% 73.7%
D3 medium residues 248-320
PDB