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STL6-S73_scaffold_1_prodigal-single.1__X__X__00383

Bact-Vir

STL6-S73_scaffold_1_prodigal-single.1__X__X__00383

Identity

Kingdom:
phage

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 133-193
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.64 43.0 3.23e-01 98.4% 25.9%
2qsbA00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.60 44.0 3.99e-01 78.7% 91.8%
2vm6A00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.60 45.0 3.54e-01 83.6% 43.1%
3k1rB00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.57 39.0 3.69e-01 82.0% 59.5%
1x2mA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.55 35.0 3.69e-01 86.9% 74.1%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 42.0 3.77e-01 100.0% 61.2%
3k5wA01 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.52 42.0 2.97e-01 91.8% 43.2%
4cgyA04 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.52 41.0 3.34e-01 88.5% 89.6%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.52 35.0 3.88e-01 77.0% 93.6%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.51 38.0 3.46e-01 85.2% 80.2%
2e19A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.50 34.0 3.66e-01 82.0% 93.6%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219299 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.66 50.0 3.79e-01 80.3% 80.0%
3714844 102.5.1.0 alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.64 45.0 4.56e-01 83.6% 75.0%
5079293 1030.1.1.0 alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.57 43.0 3.49e-01 83.6% 72.0%
3798708 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.55 41.0 3.81e-01 80.3% 70.0%
4620690 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.55 31.0 3.46e-01 83.6% 71.1%
3268267 102.1.1.1 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 0.54 40.0 4.07e-01 82.0% 81.7%
3617148 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.54 41.0 3.18e-01 85.2% 69.3%
4101936 6171.1.1.0 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.51 43.0 4.05e-01 100.0% 80.0%
3922386 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.50 44.0 3.77e-01 98.4% 80.0%
D2 medium residues 2-40
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mq0A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 65.0 5.27e-01 100.0% 49.4%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 5.33e-01 100.0% 63.0%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 4.99e-01 100.0% 50.0%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 59.0 4.96e-01 100.0% 60.0%
1j75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.02e-01 100.0% 70.2%
1lvaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.78e-01 100.0% 64.5%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 4.55e-01 100.0% 55.0%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 46.0 3.84e-01 100.0% 52.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591982 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 1.00 94.0 7.29e-01 100.0% 54.7%
4950418 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.84 72.0 6.30e-01 100.0% 71.7%
4928557 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.82 71.0 6.20e-01 100.0% 66.7%
5020732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 68.0 5.71e-01 100.0% 61.4%
4982795 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 68.0 5.84e-01 100.0% 67.7%
4927755 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 66.0 5.98e-01 100.0% 69.1%
5082520 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.80 67.0 6.29e-01 100.0% 86.0%
5064032 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 68.0 5.65e-01 100.0% 61.4%
5046651 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 5.59e-01 100.0% 58.1%
5016964 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 5.60e-01 100.0% 61.4%
4991298 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 67.0 5.39e-01 100.0% 53.8%
5025361 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.79 67.0 5.42e-01 100.0% 55.1%
5071474 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.79 67.0 5.36e-01 100.0% 53.8%
4955413 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.79 64.0 5.82e-01 100.0% 67.3%
4959768 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 69.0 5.97e-01 100.0% 71.7%
5031401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 5.39e-01 100.0% 55.0%
5019697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 67.0 5.20e-01 100.0% 48.9%
5033689 101.1.2.368 alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.78 66.0 5.81e-01 100.0% 71.7%
4967393 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.43e-01 100.0% 68.6%
4938222 101.1.2.919 alpha arrays › HTH › HTH › winged helix domain › DUF5817_CT 0.78 67.0 5.57e-01 100.0% 61.4%
5074849 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.85e-01 100.0% 78.2%
4981859 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.54e-01 100.0% 66.2%
4983360 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 5.17e-01 100.0% 48.8%
4941254 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 65.0 5.88e-01 100.0% 70.9%
5044592 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.76 66.0 5.46e-01 100.0% 61.4%
4994828 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.76 59.0 5.05e-01 100.0% 51.4%
4974418 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 64.0 5.54e-01 100.0% 67.2%
5023135 101.1.2.97 alpha arrays › HTH › HTH › winged helix domain › RPA_C 0.76 62.0 5.20e-01 100.0% 56.0%
5076139 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 63.0 5.37e-01 100.0% 58.5%
5065949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 62.0 5.54e-01 100.0% 66.7%
4927328 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 4.68e-01 100.0% 49.5%
5068810 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.74 61.0 5.32e-01 100.0% 73.8%
4958512 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 60.0 5.03e-01 100.0% 57.3%
3832053 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.74 60.0 4.34e-01 100.0% 31.7%
5080096 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 55.0 5.03e-01 100.0% 61.8%
5083738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.65e-01 100.0% 72.7%
5063319 101.1.2.279 alpha arrays › HTH › HTH › winged helix domain › AbiEi_4 0.72 60.0 5.49e-01 100.0% 72.7%
4942816 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 58.0 5.65e-01 100.0% 88.9%
3372110 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.71 59.0 5.00e-01 100.0% 68.6%
5034272 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.49e-01 100.0% 51.8%
3385441 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.56e-01 100.0% 53.3%
5005289 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 53.0 4.40e-01 100.0% 50.0%
D3 medium residues 47-127
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w9mB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.70 49.0 4.97e-01 74.1% 88.9%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.68 61.0 5.26e-01 100.0% 90.4%
4wqkA00 3.30.460.40 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.64 56.0 4.45e-01 100.0% 66.9%
3wfoA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.61 54.0 4.41e-01 100.0% 82.2%
4ebjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 53.0 4.58e-01 100.0% 86.7%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.59 38.0 3.35e-01 96.3% 41.7%
3tsnA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 42.0 2.81e-01 81.5% 28.8%
7qprA02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 41.0 3.48e-01 77.8% 83.7%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.54 41.0 3.00e-01 86.4% 90.4%
5d8nA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.54 39.0 2.96e-01 76.5% 87.2%
1knyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 47.0 4.09e-01 100.0% 82.4%
3c18A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 46.0 4.13e-01 100.0% 93.9%
1r89A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.51 43.0 3.82e-01 100.0% 85.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078154 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.95 85.0 6.85e-01 97.5% 54.3%
5075812 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.90 82.0 6.03e-01 100.0% 41.1%
5079837 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.88 73.0 5.67e-01 100.0% 44.4%
4928558 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.88 70.0 5.46e-01 87.7% 42.8%
4984751 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.88 79.0 5.98e-01 100.0% 44.6%
4970292 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.86 77.0 5.86e-01 100.0% 45.1%
4993095 316.2.1.1 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like › AbiEi_1 0.84 78.0 5.70e-01 100.0% 41.0%
5082556 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.84 77.0 5.62e-01 100.0% 41.0%
4992876 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.82 68.0 5.14e-01 98.8% 38.9%
5041540 316.2.1.1 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like › AbiEi_1 0.80 73.0 5.49e-01 100.0% 42.6%
5064534 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.79 72.0 5.87e-01 100.0% 59.3%
3590445 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.79 72.0 5.95e-01 100.0% 58.6%
4992487 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.78 71.0 5.88e-01 100.0% 57.9%
5080494 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.78 71.0 5.78e-01 100.0% 57.2%
5060886 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.76 69.0 5.33e-01 100.0% 60.6%
3289584 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.74 62.0 5.17e-01 100.0% 52.9%
5080097 316.2.1.0 a+b three layers › Nucleotidyltransferase-like › Rv2827c C-terminal domain-like › Rv2827c C-terminal domain-like 0.74 65.0 5.14e-01 100.0% 48.8%
5072250 316.1.1.41 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF6036 0.72 65.0 5.08e-01 100.0% 64.7%
5080934 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.71 63.0 4.48e-01 100.0% 51.8%
4929446 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.70 62.0 5.04e-01 100.0% 67.1%
5081356 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.70 62.0 4.42e-01 100.0% 52.5%
5079626 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.70 61.0 4.49e-01 100.0% 54.7%
5030984 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.69 61.0 4.72e-01 100.0% 62.2%
4970293 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.69 61.0 4.99e-01 100.0% 85.8%
1348877 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.68 61.0 4.37e-01 100.0% 48.7%
4958433 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.66 59.0 5.07e-01 100.0% 66.9%
3227803 70.1.1.0 beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.59 28.0 3.03e-01 93.8% 47.7%
5030995 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.58 51.0 4.20e-01 98.8% 68.7%
3279249 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.58 50.0 4.40e-01 98.8% 91.2%
5027413 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.57 49.0 4.31e-01 100.0% 92.0%
5045164 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 49.0 4.38e-01 100.0% 89.2%
2575360 316.1.1.2 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.56 49.0 4.28e-01 98.8% 84.8%
5031590 316.1.1.27 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta 0.56 48.0 4.45e-01 98.8% 92.4%
1068682 2498.1.1.47 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_Mx1 0.54 41.0 3.00e-01 86.4% 90.4%
6813 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.53 47.0 4.09e-01 100.0% 82.4%
3489007 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.51 41.0 2.90e-01 91.4% 41.3%
3816435 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 41.0 3.25e-01 92.6% 71.6%