←Back to structures
STL6-S73_scaffold_1_prodigal-single.1__X__X__00384
Bact-VirSTL6-S73_scaffold_1_prodigal-single.1__X__X__00384
Identity
- Kingdom:
- phage
Quality
94.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-161
Domain cluster:
rep: LC554890.1__BCG50042.1__X__00024__D127-241
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08843.18 best | AbiEii | 63.1 | 5.50e-17 | 80.1% | 44.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4o8sA01 | 3.10.450.620 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain | 0.82 | 59.0 | 6.67e-01 | 92.5% | 94.4% |
| 4fh3A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.67 | 46.0 | 5.14e-01 | 85.1% | 88.8% |
| 4wyqB00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 25.0 | 3.56e-01 | 71.4% | 72.0% |
| 3nybA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.66 | 43.0 | 5.08e-01 | 82.6% | 96.4% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 42.0 | 5.04e-01 | 85.1% | 99.1% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.64 | 39.0 | 4.59e-01 | 92.5% | 88.9% |
| 2rffA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.59 | 37.0 | 4.44e-01 | 91.9% | 92.8% |
| 3kxwA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.58 | 35.0 | 3.92e-01 | 90.1% | 76.6% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 21.0 | 3.11e-01 | 72.7% | 73.2% |
| 2kpnA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 29.0 | 3.94e-01 | 80.1% | 98.7% |
| 4oagB02 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.56 | 47.0 | 4.46e-01 | 88.8% | 89.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 28.0 | 3.85e-01 | 83.9% | 100.0% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 30.0 | 3.57e-01 | 77.6% | 82.1% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078331 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.88 | 75.0 | 6.21e-01 | 95.0% | 54.2% |
| 4984749 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.86 | 70.0 | 5.88e-01 | 96.9% | 54.2% |
| 5080934 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.83 | 69.0 | 5.81e-01 | 100.0% | 54.5% |
| 5079626 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.82 | 63.0 | 5.56e-01 | 99.4% | 56.4% |
| 5082399 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.79 | 65.0 | 6.20e-01 | 96.9% | 75.6% |
| 4990267 | 316.1.1.39 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF2204 | 0.72 | 49.0 | 4.65e-01 | 84.5% | 59.0% |
| 4944346 | 316.1.1.81 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › tRNA_NucTransf2 | 0.69 | 50.0 | 5.33e-01 | 87.6% | 84.3% |
| 3886582 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.69 | 45.0 | 5.13e-01 | 84.5% | 88.3% |
| 3245031 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.67 | 45.0 | 5.28e-01 | 84.5% | 98.2% |
| 3739127 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.65 | 44.0 | 4.66e-01 | 85.1% | 77.1% |
| 4934391 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 39.0 | 4.57e-01 | 87.6% | 88.2% |
| 3743587 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.63 | 42.0 | 4.61e-01 | 85.1% | 82.3% |
| 4140035 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.63 | 46.0 | 4.91e-01 | 87.0% | 84.8% |
| 3273805 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.62 | 41.0 | 4.35e-01 | 82.0% | 75.0% |
| 3946792 | 310.3.1.3 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilN | 0.62 | 33.0 | 3.84e-01 | 88.8% | 71.3% |
| 3928348 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.61 | 44.0 | 4.59e-01 | 84.5% | 78.7% |
| 3239836 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.61 | 44.0 | 4.53e-01 | 82.6% | 78.0% |
| 5072129 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.59 | 46.0 | 4.92e-01 | 96.9% | 95.6% |
| 5006107 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.59 | 36.0 | 4.30e-01 | 87.0% | 95.0% |
| 4350555 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.59 | 37.0 | 3.70e-01 | 77.0% | 59.4% |
| 4156160 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.59 | 45.0 | 4.59e-01 | 90.1% | 80.6% |
| 4989725 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.58 | 39.0 | 4.53e-01 | 90.7% | 94.8% |
| 4379266 | 316.1.1.1 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › PolyA_pol | 0.58 | 44.0 | 4.37e-01 | 82.6% | 74.7% |
| 3832932 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.57 | 48.0 | 4.91e-01 | 90.1% | 92.3% |
| 4169675 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 45.0 | 4.50e-01 | 90.1% | 80.6% |
| 3837820 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.57 | 48.0 | 4.53e-01 | 88.8% | 83.7% |
| 4130110 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.56 | 44.0 | 4.48e-01 | 90.1% | 83.1% |
| 4453323 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.55 | 35.0 | 3.51e-01 | 78.3% | 59.4% |
| 5031280 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.54 | 40.0 | 4.13e-01 | 93.2% | 80.6% |
| 5013444 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.53 | 36.0 | 4.06e-01 | 89.4% | 91.7% |
| 4121829 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.53 | 42.0 | 4.34e-01 | 90.1% | 86.5% |
| 3599086 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.53 | 46.0 | 4.58e-01 | 93.8% | 90.9% |
| 3471756 | 316.1.1.40 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_7 | 0.53 | 46.0 | 4.22e-01 | 93.8% | 77.1% |
| 3839420 | 241.17.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › 5-methylcytosine-specific restriction enzyme B DNA-binding domain › 5-methylcytosine-specific restriction enzyme B DNA-binding domain | 0.52 | 35.0 | 3.66e-01 | 94.4% | 71.9% |
| 3927151 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.52 | 36.0 | 3.24e-01 | 89.4% | 51.4% |
| 3211799 | 316.1.1.40 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_7 | 0.51 | 45.0 | 4.05e-01 | 95.7% | 75.6% |
| 3629963 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.51 | 28.0 | 3.33e-01 | 93.2% | 80.8% |
| 3543887 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.50 | 26.0 | 3.16e-01 | 93.2% | 77.0% |
D2
high
residues 176-284
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08843.18 best | AbiEii | 33.9 | 4.60e-08 | 94.5% | 38.4% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4o8sA02 | 1.20.58.1790 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain | 0.68 | 54.0 | 5.45e-01 | 100.0% | 85.0% |
| 3nowA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 42.0 | 2.91e-01 | 100.0% | 21.8% |
| 3vldA01 | 1.25.10.50 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › | 0.58 | 39.0 | 2.87e-01 | 100.0% | 24.3% |
| 2xevB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 36.0 | 3.53e-01 | 100.0% | 54.8% |
| 1tjcA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.57 | 38.0 | 4.07e-01 | 96.3% | 77.9% |
| 5d0yA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.56 | 43.0 | 3.89e-01 | 82.6% | 96.8% |
| 2gomA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.56 | 32.0 | 3.93e-01 | 76.1% | 98.4% |
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.55 | 42.0 | 3.09e-01 | 100.0% | 29.9% |
| 2g3kA00 | 1.20.120.1130 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vps28 C-terminal domain | 0.52 | 31.0 | 3.35e-01 | 73.4% | 67.0% |
| 1gnlA01 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 36.0 | 3.33e-01 | 70.6% | 78.4% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078331 | 316.1.1.18 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii | 0.89 | 82.0 | 5.96e-01 | 99.1% | 40.4% |
| 4054695 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.57 | 43.0 | 3.74e-01 | 83.5% | 88.6% |
| 3451438 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 36.0 | 3.33e-01 | 99.1% | 46.7% |
| 5024110 | 604.39.1.1 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › CbiM | 0.55 | 43.0 | 3.67e-01 | 86.2% | 82.1% |
| 5064630 | 3883.1.1.1 ↗ | alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf | 0.52 | 46.0 | 3.79e-01 | 99.1% | 95.0% |
| 3664450 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 45.0 | 3.61e-01 | 99.1% | 80.4% |
| 3691743 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.50 | 33.0 | 3.23e-01 | 99.1% | 59.2% |