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STL6-S73_scaffold_1_prodigal-single.1__X__X__00393

Bact-Vir

STL6-S73_scaffold_1_prodigal-single.1__X__X__00393

Identity

Kingdom:
phage

Quality

83.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-112_132-257
PDB
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 56.0 6.30e-01 93.4% 100.0%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 46.0 5.45e-01 76.8% 91.3%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 53.0 5.98e-01 100.0% 98.3%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 42.0 5.36e-01 100.0% 96.6%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 37.0 4.90e-01 90.7% 96.3%
6aqgA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 49.0 5.06e-01 91.4% 77.3%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 43.0 5.21e-01 76.8% 96.9%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 4.59e-01 78.1% 68.6%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 40.0 5.10e-01 98.7% 100.0%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 36.0 4.74e-01 76.8% 96.3%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 49.0 5.11e-01 77.5% 93.6%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 48.0 5.29e-01 94.0% 92.7%
3ebeB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 52.0 5.08e-01 89.4% 77.1%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 43.0 4.87e-01 96.7% 91.3%
2iciA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 33.0 4.42e-01 75.5% 97.4%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 4.73e-01 82.8% 81.6%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 48.0 4.48e-01 80.8% 90.7%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 31.0 4.06e-01 74.8% 93.5%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 34.0 3.75e-01 94.7% 66.4%
1l1oF01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 4.64e-01 77.5% 87.8%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 3.63e-01 82.8% 57.6%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.55 32.0 4.05e-01 76.8% 97.8%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 33.0 3.77e-01 74.2% 84.2%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 25.0 3.56e-01 91.4% 98.6%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 30.0 3.21e-01 100.0% 65.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3654541 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.77 52.0 6.02e-01 92.7% 94.5%
3287532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 49.0 5.85e-01 87.4% 99.0%
3640971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 51.0 5.08e-01 80.1% 67.7%
3610888 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 52.0 5.54e-01 91.4% 82.3%
5030516 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.73 49.0 5.70e-01 92.7% 96.2%
3853782 2.1.1.269 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30822 0.72 51.0 5.68e-01 90.7% 91.7%
143390 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.72 35.0 4.85e-01 76.8% 93.4%
3750530 2.1.1.269 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30822 0.71 52.0 5.53e-01 94.0% 85.2%
3876051 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.71 40.0 5.22e-01 86.1% 98.8%
5054128 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 48.0 5.34e-01 88.7% 89.6%
3991931 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.70 50.0 5.59e-01 93.4% 92.5%
3598329 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 52.0 5.62e-01 90.7% 91.2%
5047681 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 49.0 5.36e-01 95.4% 86.4%
3675935 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.70 52.0 5.53e-01 77.5% 85.9%
3356276 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 51.0 5.55e-01 91.4% 90.4%
3625857 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.70 52.0 5.62e-01 96.0% 90.0%
3931674 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 51.0 5.74e-01 88.1% 98.3%
3444970 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.70 46.0 4.95e-01 94.7% 76.9%
3807621 2.1.1.348 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223, Rep-A_N 0.70 51.0 4.11e-01 91.4% 41.1%
3474782 2.1.1.67 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.70 51.0 5.41e-01 83.4% 85.2%
5015437 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 51.0 5.42e-01 83.4% 85.2%
3775920 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.69 41.0 4.54e-01 86.8% 71.2%
3649749 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.69 51.0 4.45e-01 90.1% 51.3%
3484465 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 49.0 5.62e-01 94.7% 100.0%
3446498 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.69 51.0 5.26e-01 90.1% 81.4%
3612666 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 54.0 5.82e-01 96.0% 96.2%
3789376 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 50.0 5.39e-01 93.4% 87.7%
4451383 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.68 49.0 4.98e-01 91.4% 75.9%
3667340 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 51.0 5.52e-01 93.4% 92.8%
4014971 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 50.0 5.40e-01 93.4% 88.5%
3870119 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.68 58.0 5.60e-01 89.4% 82.4%
3194612 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.68 50.0 5.18e-01 95.4% 80.0%
3830552 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 49.0 5.12e-01 91.4% 81.4%
4945682 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 50.0 5.43e-01 95.4% 92.8%
3604133 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.67 50.0 5.26e-01 83.4% 85.9%
3936025 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.67 43.0 5.21e-01 77.5% 99.0%
4942779 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.67 49.0 5.56e-01 94.0% 100.0%
3411413 2.1.1.119 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM10_OB 0.66 56.0 5.40e-01 89.4% 80.0%
3222288 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 46.0 5.21e-01 70.9% 93.0%
3784708 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.66 38.0 4.86e-01 86.1% 98.8%
4028113 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.66 51.0 5.30e-01 96.0% 86.4%
3643736 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.66 52.0 5.35e-01 96.0% 86.2%
3499943 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.66 50.0 5.20e-01 96.0% 85.0%
3476170 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 48.0 5.42e-01 80.1% 100.0%
5008070 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 52.0 5.62e-01 83.4% 100.0%
4165771 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.65 48.0 5.11e-01 92.7% 86.7%
4954093 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.64 49.0 5.35e-01 79.5% 96.8%
3255112 2.1.1.80 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.63 46.0 5.19e-01 92.7% 98.3%
3490309 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 46.0 4.87e-01 80.1% 83.7%
3733759 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 46.0 4.82e-01 75.5% 90.4%
None 0.62 48.0 4.64e-01 80.8% 75.3%
3659298 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.61 47.0 4.54e-01 100.0% 72.1%
24072 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.61 36.0 4.53e-01 70.2% 100.0%
3380367 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 48.0 4.40e-01 83.4% 99.0%
3673251 2.1.1.76 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.59 50.0 4.79e-01 98.0% 78.3%
3997614 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 36.0 4.00e-01 70.9% 75.8%
4009147 2.1.1.292 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF30365 0.59 54.0 4.62e-01 100.0% 84.2%
3963716 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 38.0 4.42e-01 71.5% 90.9%
3407895 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.57 45.0 4.64e-01 94.7% 90.0%
3741431 2.1.1.42 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.56 48.0 4.82e-01 98.7% 92.7%
3469751 2.3.1.2 beta barrels › OB-fold › TIMP-like › TIMP-like › NTR 0.55 42.0 4.30e-01 96.7% 82.8%
3614906 4.26.1.8 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 0.54 25.0 3.58e-01 84.1% 94.3%
3643549 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.53 26.0 3.46e-01 94.0% 87.5%
4946993 4.1.1.479 beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.51 25.0 3.56e-01 91.4% 100.0%
3983036 2484.1.1.119 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1 0.51 23.0 3.36e-01 85.4% 96.9%
D2 medium residues 1-87
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4o1sA00 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.58 46.0 3.77e-01 88.5% 98.8%
1wgmA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 35.0 3.70e-01 92.0% 80.8%
4wz2C00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 34.0 3.67e-01 92.0% 79.7%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3226694 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.56e-01 77.0% 79.1%
4887360 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 23.0 2.71e-01 71.3% 51.7%
3878373 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.52 34.0 3.67e-01 92.0% 82.9%
5024594 312.1.1.2 a+b three layers › HIT-like › HIT-related › HIT-related › HIT 0.51 34.0 3.02e-01 70.1% 83.0%
5046180 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 36.0 3.26e-01 77.0% 58.4%
3373362 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 40.0 2.42e-01 87.4% 20.0%