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STL6-S73_scaffold_1_prodigal-single.1__X__X__00394
Bact-VirSTL6-S73_scaffold_1_prodigal-single.1__X__X__00394
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-74
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bmlC03 | 3.10.20.150 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 47.0 | 4.47e-01 | 84.7% | 92.8% |
| 1fgxA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 46.0 | 3.15e-01 | 87.5% | 79.8% |
| 2dzjA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 45.0 | 4.20e-01 | 84.7% | 87.5% |
| 1gsaA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.56 | 42.0 | 4.36e-01 | 93.1% | 92.3% |
| 3i57A01 | 3.10.20.470 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 43.0 | 4.32e-01 | 83.3% | 94.7% |
| 3tpaA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.56 | 42.0 | 3.02e-01 | 80.6% | 95.0% |
| 1ty0B01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 44.0 | 3.74e-01 | 91.7% | 80.3% |
| 3fzgA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 38.0 | 2.92e-01 | 73.6% | 75.5% |
| 4c12A02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.55 | 38.0 | 2.73e-01 | 72.2% | 90.8% |
| 2imqX00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.54 | 37.0 | 2.56e-01 | 72.2% | 30.7% |
| 4as2A02 | 1.20.1440.310 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.54 | 41.0 | 3.77e-01 | 86.1% | 99.0% |
| 3q91B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 40.0 | 3.40e-01 | 83.3% | 60.3% |
| 2b1xB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 44.0 | 3.46e-01 | 95.8% | 84.4% |
| 5c6dA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.61e-01 | 87.5% | 83.2% |
| 2bueA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 35.0 | 2.70e-01 | 73.6% | 53.6% |
| 5qoqA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 38.0 | 3.09e-01 | 84.7% | 55.0% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3111925 | 3114.1.1.2 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 | 0.57 | 45.0 | 4.38e-01 | 84.7% | 87.5% |
| 163967 | 221.1.1.72 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › TECR_N | 0.57 | 45.0 | 4.20e-01 | 84.7% | 87.5% |
| 4997121 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.57 | 33.0 | 2.46e-01 | 79.2% | 21.6% |
| 3997671 | 7516.1.1.13 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N | 0.57 | 44.0 | 3.35e-01 | 84.7% | 86.9% |
| 4027082 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.56 | 46.0 | 4.16e-01 | 87.5% | 92.6% |
| 3183075 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 44.0 | 4.06e-01 | 84.7% | 96.8% |
| 1101007 | 3114.1.1.2 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP_2 | 0.56 | 43.0 | 4.26e-01 | 83.3% | 91.0% |
| 4958265 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.55 | 43.0 | 3.49e-01 | 83.3% | 71.9% |
| 3687587 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.55 | 45.0 | 4.03e-01 | 88.9% | 98.0% |
| 3177204 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.54 | 40.0 | 4.24e-01 | 81.9% | 95.3% |
| 3814388 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 37.0 | 2.41e-01 | 73.6% | 29.0% |
| 4077181 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 40.0 | 4.32e-01 | 83.3% | 98.3% |
| 4952589 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 38.0 | 4.15e-01 | 84.7% | 93.3% |
| 4532362 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 40.0 | 4.18e-01 | 83.3% | 90.8% |
| 4058844 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 40.0 | 4.16e-01 | 81.9% | 90.8% |
| 4177594 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.52 | 40.0 | 4.23e-01 | 84.7% | 92.3% |
| 3265492 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.52 | 41.0 | 4.27e-01 | 84.7% | 93.8% |
| 4037465 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.52 | 40.0 | 4.18e-01 | 83.3% | 95.2% |
| 3304181 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.52 | 40.0 | 4.21e-01 | 84.7% | 92.3% |
| 1759949 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.52 | 40.0 | 4.12e-01 | 84.7% | 89.6% |
| 4951383 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.51 | 36.0 | 3.53e-01 | 84.7% | 67.5% |
| 4984657 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.51 | 37.0 | 3.59e-01 | 84.7% | 67.1% |
| 4058810 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.51 | 39.0 | 4.06e-01 | 83.3% | 93.8% |
| 4451373 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.51 | 39.0 | 4.12e-01 | 83.3% | 100.0% |
| 5020150 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.51 | 37.0 | 3.52e-01 | 84.7% | 65.9% |
| 5003526 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.51 | 37.0 | 3.59e-01 | 84.7% | 68.2% |
| 4417871 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.50 | 38.0 | 4.03e-01 | 83.3% | 93.7% |