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STL6-S73_scaffold_1_prodigal-single.1__X__X__00402
Bact-VirSTL6-S73_scaffold_1_prodigal-single.1__X__X__00402
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-106
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ek0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.55 | 37.0 | 3.91e-01 | 85.1% | 76.7% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 37.0 | 3.68e-01 | 88.1% | 67.6% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 37.0 | 3.69e-01 | 88.1% | 69.8% |
| 2cc6A00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.52 | 31.0 | 3.59e-01 | 85.1% | 90.6% |
| 1ug8A00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.52 | 32.0 | 3.46e-01 | 86.1% | 72.4% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 39.0 | 3.09e-01 | 83.2% | 92.6% |
| 4kt5C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 35.0 | 3.69e-01 | 86.1% | 80.7% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 37.0 | 3.49e-01 | 91.1% | 61.7% |
| 6kf9G01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 37.0 | 3.98e-01 | 93.1% | 97.6% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4993554 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 39.0 | 3.49e-01 | 88.1% | 50.0% |
| 5051534 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.53 | 36.0 | 3.02e-01 | 88.1% | 38.4% |
| 3394822 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.52 | 41.0 | 3.40e-01 | 95.0% | 45.1% |
| 3485716 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.51 | 40.0 | 3.32e-01 | 94.1% | 45.8% |
| 3488429 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.51 | 40.0 | 3.37e-01 | 95.0% | 47.6% |
| 3550392 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.29e-01 | 95.0% | 45.9% |
| 286927 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.51 | 37.0 | 3.44e-01 | 91.1% | 59.0% |
| None | — | 0.50 | 39.0 | 3.27e-01 | 95.0% | 45.9% |
D2
high
residues 123-233
Domain cluster:
rep: EU399241.1__ABY90398.1__HAPgp30__00030__D90-194
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 36.0 | 4.48e-01 | 95.5% | 83.6% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.66 | 41.0 | 4.83e-01 | 99.1% | 95.8% |
| 1z47A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 28.0 | 4.07e-01 | 79.3% | 89.8% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.64 | 31.0 | 3.84e-01 | 77.5% | 74.6% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.62 | 33.0 | 3.07e-01 | 100.0% | 39.9% |
| 4a18X01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 40.0 | 4.54e-01 | 99.1% | 92.4% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 35.0 | 3.79e-01 | 100.0% | 66.3% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 39.0 | 3.50e-01 | 97.3% | 46.7% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 32.0 | 3.34e-01 | 100.0% | 54.5% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.59 | 34.0 | 3.41e-01 | 97.3% | 55.9% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.57 | 31.0 | 3.79e-01 | 81.1% | 81.7% |
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.57 | 51.0 | 3.17e-01 | 100.0% | 89.6% |
| 4f98A00 | 2.30.140.50 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Protein of unknown function DUF2790 | 0.56 | 25.0 | 3.22e-01 | 73.9% | 72.6% |
| 7q61A01 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 34.0 | 3.49e-01 | 100.0% | 62.4% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.53 | 38.0 | 3.16e-01 | 94.6% | 42.5% |
| 3bc9A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 28.0 | 3.00e-01 | 95.5% | 59.1% |
| 1g0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.33e-01 | 99.1% | 64.5% |
| 2mcmA00 | 2.60.40.230 | Mainly Beta › Sandwich › Immunoglobulin-like › Neocarzinostatin-like | 0.51 | 34.0 | 3.44e-01 | 91.9% | 67.0% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 35.0 | 3.42e-01 | 100.0% | 64.0% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3490255 | 11.1.4.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7062 | 0.67 | 37.0 | 3.88e-01 | 100.0% | 59.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.67 | 38.0 | 4.80e-01 | 94.6% | 96.9% |
| 5028431 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 41.0 | 4.66e-01 | 98.2% | 85.0% |
| 2106284 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.66 | 40.0 | 4.83e-01 | 100.0% | 100.0% |
| 4996552 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.65 | 38.0 | 4.26e-01 | 95.5% | 74.1% |
| 4003316 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.65 | 41.0 | 3.94e-01 | 100.0% | 56.8% |
| 4084879 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 39.0 | 4.39e-01 | 100.0% | 78.8% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.64 | 40.0 | 2.78e-01 | 97.3% | 19.2% |
| 3999001 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.64 | 40.0 | 4.13e-01 | 100.0% | 66.7% |
| 3508212 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.64 | 37.0 | 4.43e-01 | 96.4% | 90.0% |
| 3894181 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.64 | 34.0 | 2.87e-01 | 100.0% | 32.6% |
| 3619496 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 42.0 | 2.85e-01 | 97.3% | 20.0% |
| 5044389 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.62 | 30.0 | 4.16e-01 | 78.4% | 100.0% |
| 3892842 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.62 | 35.0 | 4.30e-01 | 97.3% | 93.8% |
| 4943909 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 35.0 | 3.51e-01 | 100.0% | 53.9% |
| 3259237 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 42.0 | 4.86e-01 | 100.0% | 98.8% |
| 4332626 | 3532.1.1.0 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase | 0.61 | 37.0 | 2.36e-01 | 97.3% | 11.1% |
| 4594302 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.60 | 32.0 | 3.16e-01 | 81.1% | 47.8% |
| 3654790 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 31.0 | 3.94e-01 | 77.5% | 90.0% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.59 | 39.0 | 4.61e-01 | 96.4% | 98.7% |
| 5018171 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 30.0 | 3.55e-01 | 76.6% | 69.3% |
| 3280008 | 3115.1.1.2 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4288 | 0.57 | 39.0 | 4.19e-01 | 100.0% | 86.7% |
| 3220912 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.56 | 36.0 | 3.51e-01 | 100.0% | 56.8% |
| 3383138 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 30.0 | 3.55e-01 | 79.3% | 74.4% |
| 3331651 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.54 | 39.0 | 3.59e-01 | 100.0% | 58.6% |
| 3576788 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.52 | 35.0 | 3.72e-01 | 100.0% | 78.0% |
| 3220909 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.51 | 36.0 | 3.58e-01 | 100.0% | 67.5% |
| 3619356 | 1116.1.1.2 ↗ | a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD | 0.50 | 38.0 | 3.13e-01 | 100.0% | 42.9% |