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SWIB-domain_containing_protein

Euk-Vir

Chrysochromulina_ericina_virus

SWIB-domain_containing_protein__YP_009173598__Chrysochromulina_ericina_virus__455364

Identity

Accession:
YP_009173598 ↗
Protein ID:
SWIB-domain_containing_protein
Kingdom:
euk

Quality

65.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Algavirales› Phycodnaviridae› Chrysochromulina_ericina_virus

TaxID: 455364

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 148-223
PDB
Domain cluster: rep: SWIB_MDM2_domain-containing_protein__YP_010084768__Shrimp_hemocyte_iridescent_virus__2039780__D52-119_203-218
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02201.24 best SWIB 59.6 2.80e-16 100.0% 93.2%
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.82 74.0 6.71e-01 98.7% 74.3%
2ruhA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.81 75.0 6.15e-01 100.0% 60.3%
2vyrA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.77 70.0 6.74e-01 100.0% 92.9%
2hpsA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 54.0 4.17e-01 98.7% 84.8%
3hx4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 3.60e-01 98.7% 87.3%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 3.73e-01 93.4% 67.8%
4z5qA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.53 44.0 2.94e-01 98.7% 25.6%
2o8iA00 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.51 44.0 3.58e-01 98.7% 98.1%
3o4yA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 42.0 3.78e-01 94.7% 77.3%
1tvlA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.51 38.0 2.47e-01 81.6% 86.2%
3iu5A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 44.0 3.86e-01 98.7% 93.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3342458 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.95 86.0 8.23e-01 100.0% 84.7%
3291925 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.93 85.0 8.24e-01 100.0% 88.0%
4023906 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.93 78.0 7.90e-01 100.0% 89.3%
3397186 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.92 81.0 7.79e-01 100.0% 83.3%
4023918 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.92 80.0 7.90e-01 100.0% 87.5%
3304793 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.91 80.0 7.84e-01 100.0% 87.5%
3228151 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.91 80.0 7.45e-01 100.0% 77.8%
3937307 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.91 79.0 7.58e-01 100.0% 82.4%
3673440 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.90 63.0 7.13e-01 75.0% 91.7%
3653924 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.90 81.0 7.68e-01 100.0% 82.8%
3694701 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.90 78.0 7.50e-01 100.0% 82.4%
3804979 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.90 80.0 7.92e-01 100.0% 90.0%
3478963 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.90 78.0 7.87e-01 100.0% 93.3%
2531311 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.86 79.0 7.35e-01 100.0% 90.4%
3832446 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.85 79.0 7.88e-01 98.7% 96.2%
3480392 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.85 78.0 7.04e-01 100.0% 91.0%
3423103 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.84 78.0 7.50e-01 98.7% 88.2%
52416 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.83 71.0 6.60e-01 100.0% 75.3%
3433591 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.83 77.0 7.08e-01 100.0% 92.6%
3177029 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.83 77.0 7.24e-01 100.0% 96.7%
3366090 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.83 76.0 7.01e-01 100.0% 92.6%
3357973 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 77.0 7.58e-01 100.0% 95.0%
3445 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 74.0 6.71e-01 98.7% 74.3%
3447434 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 76.0 7.33e-01 100.0% 89.4%
147398 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 75.0 7.19e-01 100.0% 90.8%
3268570 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.81 73.0 6.56e-01 100.0% 93.3%
3789240 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.75 67.0 6.61e-01 100.0% 92.5%
3653649 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.71 59.0 5.75e-01 90.8% 90.6%
3821041 4958.1.1.1 ↗ a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5,RNA_pol_Rpb1_4 0.66 58.0 4.04e-01 96.1% 53.6%
3056058 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 49.0 4.93e-01 85.5% 100.0%
3750925 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.55 46.0 3.53e-01 100.0% 83.0%
None — 0.52 46.0 4.40e-01 100.0% 93.3%
4438233 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.50 40.0 3.61e-01 86.8% 84.8%
3383160 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.50 42.0 3.22e-01 98.7% 71.5%