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SWIB_MDM2_domain-containing_protein
Euk-VirAcanthamoeba_polyphaga_moumouvirus
SWIB_MDM2_domain-containing_protein__YP_007354270__Acanthamoeba_polyphaga_moumouvirus__1269028
Identity
- Accession:
- YP_007354270 ↗
- Protein ID:
- SWIB_MDM2_domain-containing_protein
- Kingdom:
- euk
Quality
70.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Imitervirales›
Mimiviridae›
Moumouvirus›
Acanthamoeba_polyphaga_moumouvirus
TaxID: 1269028
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 113-196
Domain cluster:
rep: SWIB_MDM2_domain-containing_protein__YP_010084768__Shrimp_hemocyte_iridescent_virus__2039780__D52-119_203-218
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02201.24 best | SWIB | 45.8 | 5.90e-12 | 91.7% | 91.9% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ruhA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.83 | 77.0 | 6.51e-01 | 98.8% | 65.6% |
| 1v32A00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.81 | 70.0 | 6.57e-01 | 92.9% | 78.2% |
| 2vyrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.80 | 71.0 | 7.08e-01 | 96.4% | 95.3% |
| 1uhrA00 | 1.10.245.10 | Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain | 0.78 | 72.0 | 6.95e-01 | 100.0% | 89.2% |
| 2hpsA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 50.0 | 4.01e-01 | 98.8% | 95.1% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.54 | 29.0 | 3.32e-01 | 91.7% | 71.7% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 40.0 | 4.05e-01 | 92.9% | 80.5% |
| 3htkC01 | 1.20.120.1010 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 41.0 | 3.18e-01 | 89.3% | 76.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.51 | 37.0 | 3.54e-01 | 77.4% | 77.6% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3694701 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.91 | 75.0 | 7.53e-01 | 92.9% | 85.9% |
| 3304793 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.90 | 76.0 | 7.81e-01 | 96.4% | 92.5% |
| 3342458 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.90 | 77.0 | 7.74e-01 | 96.4% | 89.4% |
| 3478963 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.90 | 75.0 | 7.99e-01 | 96.4% | 98.7% |
| 3937307 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.89 | 74.0 | 7.41e-01 | 92.9% | 85.9% |
| 4023906 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.89 | 71.0 | 7.47e-01 | 92.9% | 93.3% |
| 3291925 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.88 | 75.0 | 7.61e-01 | 94.0% | 91.6% |
| 3397186 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.87 | 73.0 | 7.34e-01 | 96.4% | 88.1% |
| 3804979 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.87 | 73.0 | 7.52e-01 | 92.9% | 93.8% |
| 3653924 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.86 | 74.0 | 7.31e-01 | 94.0% | 87.4% |
| 3673440 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.86 | 58.0 | 6.83e-01 | 73.8% | 98.3% |
| 4023918 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.86 | 70.0 | 7.20e-01 | 92.9% | 91.3% |
| 52416 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.85 | 70.0 | 6.75e-01 | 92.9% | 78.5% |
| 147398 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.85 | 74.0 | 7.35e-01 | 92.9% | 94.3% |
| 3228151 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.84 | 74.0 | 7.25e-01 | 96.4% | 86.7% |
| 3177029 | 178.1.1.2 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D | 0.84 | 75.0 | 7.38e-01 | 96.4% | 97.8% |
| 3268570 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.83 | 72.0 | 6.61e-01 | 92.9% | 94.3% |
| 3357973 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.82 | 71.0 | 7.27e-01 | 91.7% | 97.5% |
| 3480392 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.82 | 71.0 | 6.66e-01 | 92.9% | 94.0% |
| 3433591 | 178.1.1.2 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D | 0.82 | 73.0 | 7.04e-01 | 96.4% | 94.7% |
| 3832446 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.82 | 72.0 | 7.44e-01 | 95.2% | 100.0% |
| 3366090 | 178.1.1.2 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D | 0.82 | 73.0 | 7.03e-01 | 96.4% | 94.7% |
| 3445 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.81 | 70.0 | 6.57e-01 | 92.9% | 78.2% |
| 3423103 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.81 | 71.0 | 7.13e-01 | 94.0% | 92.9% |
| 3447434 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.78 | 70.0 | 7.06e-01 | 96.4% | 96.5% |
| 2995615 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.78 | 70.0 | 6.61e-01 | 96.4% | 84.7% |
| 3446 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.78 | 72.0 | 6.95e-01 | 100.0% | 89.2% |
| 3789240 | 178.1.1.0 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain | 0.77 | 65.0 | 6.62e-01 | 96.4% | 95.0% |
| 3653649 | 178.1.1.1 ↗ | alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB | 0.71 | 57.0 | 5.72e-01 | 85.7% | 94.1% |
| 3555724 | 108.1.1.30 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_8 | 0.63 | 45.0 | 4.63e-01 | 75.0% | 97.5% |
| 3803053 | 108.1.1.129 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › DUF7874 | 0.61 | 35.0 | 3.45e-01 | 95.2% | 52.2% |
| 3542805 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.58 | 41.0 | 4.07e-01 | 75.0% | 100.0% |
| 3606903 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.58 | 40.0 | 4.21e-01 | 91.7% | 81.3% |
| 3916206 | 108.1.1.101 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5, EF-hand_7, EF-hand_8 | 0.56 | 45.0 | 3.50e-01 | 89.3% | 71.1% |
| 5058265 | 206.1.3.3 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N | 0.55 | 45.0 | 3.28e-01 | 92.9% | 40.4% |
| 3632793 | 101.1.2.309 ↗ | alpha arrays › HTH › HTH › winged helix domain › GPAT_C | 0.54 | 44.0 | 4.17e-01 | 94.0% | 74.0% |
| 3789525 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.53 | 46.0 | 4.58e-01 | 98.8% | 98.9% |
| 4959470 | 873.1.1.12 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 | 0.52 | 42.0 | 3.74e-01 | 88.1% | 65.0% |
| 1843009 | 3783.1.1.1 ↗ | alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › RnlA-toxin_DBD | 0.51 | 45.0 | 3.61e-01 | 100.0% | 84.3% |
| 3820188 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 40.0 | 3.93e-01 | 88.1% | 89.5% |
D2
medium
residues 45-106