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SWIB_MDM2_domain-containing_protein

Euk-Vir

Shrimp_hemocyte_iridescent_virus

SWIB_MDM2_domain-containing_protein__YP_010084768__Shrimp_hemocyte_iridescent_virus__2039780

Identity

Accession:
YP_010084768 ↗
Protein ID:
SWIB_MDM2_domain-containing_protein
Kingdom:
euk

Quality

73.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Decapodiridovirus› Shrimp_hemocyte_iridescent_virus

TaxID: 2039780

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42
PDB
Domain cluster: representative
D2 high residues 127-202
PDB
D3 medium residues 52-119_203-218
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02201.24 best SWIB 46.9 2.60e-12 86.9% 100.0%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v32A00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.83 67.0 6.26e-01 85.7% 77.2%
1uhrA00 1.10.245.10 Mainly Alpha › Orthogonal Bundle › MDM2 › SWIB/MDM2 domain 0.76 69.0 6.69e-01 100.0% 89.2%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.70 39.0 4.29e-01 95.2% 67.6%
7wboA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.66 52.0 4.06e-01 84.5% 95.0%
3kh1A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.54 41.0 3.23e-01 83.3% 82.6%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.86e-01 79.8% 73.6%
2mhjA00 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 42.0 4.04e-01 94.0% 75.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3653924 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.87 78.0 7.72e-01 95.2% 95.4%
3342458 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.87 80.0 7.97e-01 97.6% 97.6%
3804979 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.87 73.0 7.56e-01 89.3% 96.2%
3291925 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.86 76.0 7.74e-01 96.4% 95.2%
3832446 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.85 69.0 7.14e-01 84.5% 98.7%
3447434 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.85 69.0 6.96e-01 85.7% 91.8%
3804956 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.85 74.0 7.08e-01 92.9% 95.8%
4023918 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.84 71.0 7.34e-01 90.5% 95.0%
3357973 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.84 68.0 7.00e-01 85.7% 97.5%
3397186 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 76.0 7.65e-01 97.6% 97.6%
3304793 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 71.0 7.27e-01 96.4% 95.0%
3423103 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 68.0 6.78e-01 85.7% 91.8%
3937307 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 73.0 7.36e-01 96.4% 94.1%
3694701 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 71.0 7.16e-01 96.4% 90.6%
3445 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.83 67.0 6.26e-01 85.7% 77.2%
3228151 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.82 72.0 7.01e-01 97.6% 87.8%
3177029 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.80 68.0 6.68e-01 91.7% 100.0%
2531311 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.78 70.0 6.71e-01 96.4% 97.9%
3433591 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.78 69.0 6.60e-01 95.2% 98.9%
3480392 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.78 68.0 6.46e-01 96.4% 97.0%
3366090 178.1.1.2 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB_eIF2D 0.77 69.0 6.61e-01 96.4% 98.9%
3268570 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.77 68.0 6.25e-01 95.2% 97.1%
3696049 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.77 67.0 6.32e-01 95.2% 99.0%
52416 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.76 66.0 6.44e-01 95.2% 86.0%
3446 178.1.1.1 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB 0.76 69.0 6.69e-01 100.0% 89.2%
3599691 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.76 67.0 6.41e-01 95.2% 95.8%
3716741 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.75 66.0 6.49e-01 95.2% 100.0%
3789240 178.1.1.0 ↗ alpha arrays › SWIB/MDM2 domain › SWIB/MDM2 domain › SWIB/MDM2 domain 0.73 61.0 6.26e-01 91.7% 96.2%
3263245 198.1.1.1 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.67 41.0 4.30e-01 81.0% 66.7%
3226589 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.64 49.0 3.89e-01 84.5% 88.6%
3651030 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.64 52.0 4.11e-01 89.3% 93.1%
3191826 5058.1.1.0 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.60 36.0 3.63e-01 88.1% 58.8%
3438527 219.1.1.23 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.57 48.0 3.45e-01 92.9% 90.8%
5077332 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.55 46.0 3.43e-01 94.0% 84.4%
3164807 101.1.2.628 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26433 0.55 45.0 4.14e-01 90.5% 96.4%
4965539 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.54 39.0 2.93e-01 89.3% 31.0%
3637931 4020.1.1.0 ↗ a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes 0.53 36.0 3.26e-01 97.6% 50.4%
4429398 108.1.1.114 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_6, EF-hand_7 0.52 42.0 3.57e-01 91.7% 88.7%
4946605 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 35.0 2.49e-01 70.2% 43.1%
3947665 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.52 38.0 3.20e-01 89.3% 46.4%
3575704 7525.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_1 0.51 36.0 3.05e-01 76.2% 78.7%