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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00035
Bact-VirS_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00035
Identity
- Kingdom:
- phage
Quality
38.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-87_110-138
D2
high
residues 323-468
Domain cluster:
rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00506__D147-285
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00691.26 best | OmpA | 32.1 | 1.80e-07 | 80.1% | 69.4% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m38C00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.84 | 63.0 | 7.15e-01 | 89.7% | 100.0% |
| 3oonA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.81 | 56.0 | 6.29e-01 | 89.7% | 90.3% |
| 2aizP01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.78 | 57.0 | 6.51e-01 | 87.7% | 100.0% |
| 5wtpA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.77 | 63.0 | 6.79e-01 | 91.8% | 99.2% |
| 3cypB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.77 | 60.0 | 6.34e-01 | 91.1% | 91.5% |
| 4rhaA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.76 | 65.0 | 6.88e-01 | 95.2% | 100.0% |
| 2lbtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.76 | 61.0 | 6.44e-01 | 93.2% | 93.9% |
| 6aeoB01 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.74 | 58.0 | 6.03e-01 | 89.7% | 87.4% |
| 4b62A00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.71 | 62.0 | 6.27e-01 | 91.8% | 100.0% |
| 1r1mA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.70 | 62.0 | 6.34e-01 | 93.2% | 100.0% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.70 | 61.0 | 6.07e-01 | 91.8% | 100.0% |
| 1ofuA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.70 | 44.0 | 5.37e-01 | 92.5% | 100.0% |
| 3khnB00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.68 | 60.0 | 5.87e-01 | 93.2% | 97.5% |
| 3ldtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.65 | 50.0 | 5.05e-01 | 93.2% | 80.6% |
| 1yawB01 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.62 | 44.0 | 4.60e-01 | 97.3% | 79.1% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.62 | 55.0 | 5.01e-01 | 94.5% | 77.5% |
| 2l8yA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.61 | 31.0 | 3.62e-01 | 98.6% | 67.6% |
| 1tvkA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.58 | 44.0 | 4.80e-01 | 90.4% | 100.0% |
| 2kdxA00 | 3.30.2320.80 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › | 0.56 | 43.0 | 4.63e-01 | 80.8% | 98.3% |
| 1i9zA00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.56 | 48.0 | 3.69e-01 | 93.8% | 46.7% |
| 4tm5A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.55 | 35.0 | 3.69e-01 | 95.2% | 68.9% |
| 4a2aA02 | 3.30.1490.110 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 33.0 | 4.06e-01 | 97.3% | 97.7% |
| 2uzhA00 | 3.30.1330.50 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | 0.53 | 47.0 | 4.66e-01 | 95.9% | 100.0% |
| 3n9vB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.53 | 45.0 | 3.66e-01 | 93.8% | 52.9% |
| 1josA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 35.0 | 4.06e-01 | 81.5% | 100.0% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 3.71e-01 | 100.0% | 77.1% |
| 1t8hA00 | 3.60.140.10 | Alpha Beta › 4-Layer Sandwich › CNF1/YfiH-like putative cysteine hydrolases › CNF1/YfiH-like putative cysteine hydrolases | 0.52 | 44.0 | 3.56e-01 | 91.1% | 49.6% |
| 6vu9A02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 44.0 | 3.66e-01 | 98.6% | 93.8% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4527021 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.84 | 62.0 | 6.99e-01 | 93.2% | 96.5% |
| 3967490 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.83 | 63.0 | 7.04e-01 | 89.7% | 98.3% |
| 4346934 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.81 | 60.0 | 6.70e-01 | 90.4% | 95.7% |
| 140769 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.81 | 56.0 | 6.29e-01 | 89.7% | 90.3% |
| 3948407 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.81 | 63.0 | 6.81e-01 | 91.8% | 94.4% |
| 3386470 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.81 | 64.0 | 7.04e-01 | 91.1% | 100.0% |
| 4273645 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.79 | 63.0 | 6.54e-01 | 92.5% | 87.7% |
| 2798263 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.79 | 61.0 | 6.13e-01 | 91.8% | 78.5% |
| 4676587 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.79 | 64.0 | 6.93e-01 | 95.2% | 100.0% |
| 2798318 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.79 | 61.0 | 6.08e-01 | 93.2% | 78.1% |
| 3962237 | 301.3.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like | 0.78 | 60.0 | 6.70e-01 | 88.4% | 100.0% |
| 4167111 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.78 | 61.0 | 6.75e-01 | 88.4% | 99.2% |
| 4482275 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.78 | 62.0 | 6.14e-01 | 89.7% | 80.0% |
| None | — | 0.77 | 63.0 | 6.79e-01 | 91.8% | 99.2% | |
| 3386253 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.77 | 62.0 | 6.23e-01 | 93.2% | 84.1% |
| 3385657 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.76 | 61.0 | 6.63e-01 | 91.8% | 98.4% |
| 4885799 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.76 | 59.0 | 6.39e-01 | 93.2% | 95.9% |
| 1347936 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.76 | 60.0 | 6.51e-01 | 93.2% | 97.6% |
| 344882 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.75 | 58.0 | 6.14e-01 | 87.0% | 90.6% |
| 216283 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.74 | 59.0 | 5.38e-01 | 91.1% | 64.6% |
| 1347560 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.73 | 63.0 | 6.37e-01 | 95.2% | 91.1% |
| 3964336 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.71 | 64.0 | 6.36e-01 | 94.5% | 98.0% |
| 2773879 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.71 | 61.0 | 6.13e-01 | 90.4% | 98.0% |
| 3973393 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.71 | 65.0 | 6.48e-01 | 96.6% | 98.0% |
| 3981506 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.71 | 64.0 | 6.22e-01 | 95.2% | 93.8% |
| 3387029 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 61.0 | 6.08e-01 | 91.8% | 94.7% |
| 3967481 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 61.0 | 6.04e-01 | 92.5% | 88.0% |
| None | — | 0.70 | 63.0 | 6.29e-01 | 95.9% | 100.0% | |
| 3968879 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 62.0 | 6.06e-01 | 93.2% | 94.2% |
| 1348659 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 61.0 | 6.07e-01 | 91.8% | 100.0% |
| 4007736 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.70 | 61.0 | 6.34e-01 | 92.5% | 100.0% |
| 4214736 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 62.0 | 6.10e-01 | 94.5% | 100.0% |
| 3976972 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 62.0 | 6.23e-01 | 95.2% | 100.0% |
| 4182188 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 61.0 | 5.93e-01 | 93.2% | 96.9% |
| 3339457 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.69 | 47.0 | 5.53e-01 | 90.4% | 100.0% |
| 4535669 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 62.0 | 6.00e-01 | 94.5% | 98.1% |
| 3971865 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 62.0 | 5.98e-01 | 94.5% | 97.5% |
| 1824325 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.69 | 61.0 | 6.26e-01 | 93.2% | 97.8% |
| 137312 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.68 | 60.0 | 5.87e-01 | 92.5% | 97.4% |
| 999250 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.68 | 61.0 | 5.67e-01 | 94.5% | 91.0% |
| 2499495 | 301.3.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › OmpA-like › OmpA-like › OmpA | 0.67 | 60.0 | 5.67e-01 | 94.5% | 88.9% |
| 3322800 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.67 | 47.0 | 5.09e-01 | 96.6% | 85.8% |
| 4537541 | 301.4.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA | 0.64 | 50.0 | 5.46e-01 | 90.4% | 100.0% |
| 5054344 | 301.2.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like | 0.64 | 53.0 | 4.65e-01 | 100.0% | 60.0% |
| 3588161 | 298.1.1.9 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › DapB_C | 0.63 | 40.0 | 4.62e-01 | 85.6% | 88.6% |
| 3473469 | 301.7.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like | 0.62 | 51.0 | 5.13e-01 | 96.6% | 86.0% |
| 3730273 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.61 | 45.0 | 4.83e-01 | 94.5% | 90.4% |
| 3982309 | 301.4.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Holliday junction resolvase RusA › Holliday junction resolvase RusA › RusA | 0.60 | 45.0 | 4.92e-01 | 91.1% | 96.7% |
| 3388084 | 872.10.1.0 ↗ | a+b two layers › Dodecin subunit-like › Secreted protein HP1454 N-terminal domain › Secreted protein HP1454 N-terminal domain | 0.58 | 32.0 | 4.07e-01 | 93.2% | 91.8% |
| 4381590 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.57 | 49.0 | 4.85e-01 | 92.5% | 87.7% |
| 3738884 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.55 | 47.0 | 4.46e-01 | 91.1% | 78.3% |
| 3339440 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.55 | 38.0 | 4.29e-01 | 84.2% | 98.1% |
| 4015581 | 301.13.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain | 0.54 | 47.0 | 4.54e-01 | 93.2% | 85.5% |
| 2712064 | 301.6.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like › Tubulin_C | 0.54 | 47.0 | 4.32e-01 | 96.6% | 86.2% |
| 4286263 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.53 | 36.0 | 3.79e-01 | 99.3% | 76.9% |
| 3613531 | 884.1.1.0 ↗ | a+b two layers › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain › Hypothetical protein YjiA, C-terminal domain | 0.52 | 37.0 | 3.92e-01 | 99.3% | 82.3% |
| 4023523 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 40.0 | 2.83e-01 | 82.9% | 48.1% |
| 4598961 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.50 | 33.0 | 3.68e-01 | 77.4% | 84.3% |
| 4271651 | 327.10.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › RBFA | 0.50 | 33.0 | 3.69e-01 | 78.1% | 85.2% |
D3
medium
residues 602-656