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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00087

Bact-Vir

S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00087

Identity

Kingdom:
phage

Quality

80.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 49-270
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00929.32 best RNase_T 57.1 4.50e-15 82.0% 99.4%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7t2sA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.88 68.0 7.68e-01 89.6% 100.0%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.88 54.0 6.92e-01 74.3% 100.0%
1j54A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.86 66.0 7.48e-01 85.1% 100.0%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.84 61.0 7.03e-01 96.4% 98.8%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.83 72.0 7.56e-01 98.6% 98.0%
2qxfA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.83 70.0 7.52e-01 87.4% 100.0%
1y97A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 69.0 7.30e-01 97.7% 97.0%
4okeA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.81 58.0 6.78e-01 86.5% 100.0%
2xriA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.80 67.0 6.94e-01 96.8% 93.2%
5dk5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.78 67.0 7.07e-01 97.7% 99.0%
7wrnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.75 64.0 6.76e-01 96.8% 99.5%
4qozB02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 66.0 6.62e-01 98.2% 94.6%
2qi2A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.72 39.0 5.21e-01 99.1% 99.1%
3iayA03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 55.0 5.62e-01 85.6% 100.0%
4af1A02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.65 38.0 4.86e-01 97.3% 100.0%
1sz2B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 34.0 4.46e-01 98.6% 99.2%
1kjnA00 3.40.50.10160 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › MTH777-like 0.59 28.0 3.31e-01 87.8% 63.8%
4uw9A01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.57 29.0 3.54e-01 86.0% 74.3%
2dstA00 3.40.50.12270 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 27.0 3.45e-01 98.6% 82.0%
3lloA00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.51 26.0 3.23e-01 99.1% 76.5%
2g8kA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 31.0 3.86e-01 83.8% 97.8%
6uf3A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.51 43.0 4.18e-01 100.0% 79.1%
3zyyX04 3.30.420.480 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Domain of unknown function (DUF4445) 0.51 40.0 4.31e-01 89.6% 95.7%
1qrsA05 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 28.0 3.57e-01 98.2% 93.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4586442 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.89 77.0 7.83e-01 99.5% 90.5%
4033087 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 77.0 7.83e-01 100.0% 90.9%
2888739 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.88 68.0 7.67e-01 90.1% 100.0%
3719456 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.86 72.0 7.56e-01 90.1% 92.7%
3945113 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.86 69.0 7.62e-01 98.2% 100.0%
3740318 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.86 67.0 7.33e-01 87.4% 94.6%
4640906 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.85 71.0 7.60e-01 95.0% 97.4%
3615656 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.85 74.0 7.52e-01 91.0% 92.1%
4103309 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.85 70.0 7.26e-01 100.0% 90.0%
5007230 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 71.0 7.57e-01 95.0% 97.9%
3839669 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 69.0 6.52e-01 98.6% 71.9%
3593622 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 63.0 6.88e-01 76.1% 99.5%
3822649 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 67.0 6.92e-01 89.6% 86.6%
4216340 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.84 68.0 7.26e-01 89.6% 95.3%
4044396 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 73.0 7.63e-01 100.0% 97.6%
4037317 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 70.0 7.27e-01 95.5% 93.2%
4298195 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 71.0 7.50e-01 96.8% 97.5%
4381276 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.83 73.0 7.31e-01 92.3% 89.7%
3969855 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.81 64.0 7.09e-01 98.2% 100.0%
1501363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 74.0 5.64e-01 96.8% 64.7%
3497103 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.79 71.0 6.81e-01 98.2% 83.7%
3378450 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 65.0 6.49e-01 96.8% 82.6%
3733253 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 73.0 7.00e-01 96.8% 91.6%
3491266 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.78 71.0 7.15e-01 98.2% 95.5%
3473937 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.78 68.0 7.00e-01 90.5% 98.6%
3707510 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.78 59.0 6.50e-01 86.0% 95.6%
3402227 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 71.0 7.10e-01 98.2% 93.8%
3962916 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.77 53.0 6.25e-01 84.7% 100.0%
3993235 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.77 66.0 6.76e-01 96.8% 92.6%
3647497 2484.1.1.45 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CAF1 0.76 70.0 6.38e-01 96.4% 89.2%
4505558 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.76 65.0 6.76e-01 97.7% 97.1%
3506947 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 65.0 6.73e-01 97.7% 97.6%
3528742 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 65.0 6.65e-01 97.7% 93.5%
3520911 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.75 50.0 6.08e-01 99.1% 100.0%
3711482 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.75 69.0 6.90e-01 100.0% 95.1%
185107 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.75 70.0 6.27e-01 98.2% 83.8%
3555211 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.75 64.0 6.71e-01 98.2% 98.0%
3600799 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 68.0 6.89e-01 99.5% 98.2%
3600366 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.73 65.0 6.19e-01 100.0% 80.2%
3738098 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 67.0 6.75e-01 96.8% 95.1%
3549895 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 67.0 6.69e-01 98.2% 94.7%
4541477 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.73 62.0 6.06e-01 88.3% 89.6%
3608286 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 67.0 6.48e-01 96.4% 94.7%
3229086 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.73 68.0 5.96e-01 97.7% 82.9%
4673147 2484.1.1.65 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.72 61.0 6.03e-01 88.3% 91.1%
3923319 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.72 68.0 6.70e-01 99.5% 100.0%
5045899 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.71 56.0 6.22e-01 90.1% 100.0%
3489491 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.71 67.0 6.47e-01 99.1% 91.0%
5031007 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.71 40.0 5.24e-01 99.1% 98.4%
4227733 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.70 66.0 6.57e-01 100.0% 95.7%
3392123 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 61.0 6.26e-01 96.4% 95.7%
3613256 2484.1.1.13 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.69 66.0 6.17e-01 100.0% 86.4%
3627091 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 58.0 5.70e-01 89.2% 91.3%
3741906 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.68 62.0 6.37e-01 96.8% 98.6%
3615410 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 56.0 5.27e-01 86.5% 80.4%
5068716 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.65 61.0 5.27e-01 97.3% 95.9%
3214818 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.65 60.0 4.91e-01 96.8% 64.0%
5067181 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.64 60.0 4.75e-01 97.3% 88.9%
4942685 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.64 57.0 4.35e-01 93.2% 78.4%
3705562 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.64 60.0 4.17e-01 98.6% 63.4%
4990754 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 58.0 5.79e-01 96.8% 94.2%
5076410 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 59.0 4.84e-01 97.3% 87.8%
5036329 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 56.0 5.54e-01 96.8% 88.1%
4982659 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 58.0 4.90e-01 97.3% 91.7%
4956223 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.63 58.0 5.21e-01 97.3% 86.4%
5043498 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 59.0 4.82e-01 100.0% 89.2%
5039400 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 59.0 5.23e-01 100.0% 88.0%
4500300 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 57.0 4.65e-01 97.3% 91.4%
4953654 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.61 58.0 4.96e-01 100.0% 88.8%
4966854 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 58.0 4.86e-01 100.0% 93.1%
4504110 2484.1.1.197 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1, DNA_pol_B_exo2 0.61 58.0 4.61e-01 100.0% 89.4%
4492006 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.61 58.0 5.37e-01 100.0% 91.9%
4229239 2484.1.1.85 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC_III 0.50 44.0 4.35e-01 98.2% 87.7%