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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00097

Bact-Vir

S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00097

Identity

Kingdom:
phage

Quality

58.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 179-260
PDB
Domain cluster: rep: IMGVR_UViG_3300031650_000024-3300031650-Ga0315539_10037823__D229-316
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6o38A02 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.82 68.0 6.50e-01 97.6% 78.3%
6o38A01 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.80 65.0 6.30e-01 96.3% 77.2%
6o38A03 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.79 58.0 5.85e-01 87.8% 75.9%
6o38A04 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.76 59.0 5.76e-01 100.0% 76.4%
4dnyA00 2.60.120.1230 Mainly Beta › Sandwich › Jelly Rolls › 0.72 55.0 4.99e-01 98.8% 61.5%
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.66 33.0 4.33e-01 96.3% 90.7%
7wguB01 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.64 47.0 4.56e-01 86.6% 69.2%
5fc9A00 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.62 52.0 4.98e-01 91.5% 80.0%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.61 41.0 3.93e-01 90.2% 60.0%
4dxzA00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 47.0 4.30e-01 91.5% 91.0%
6z0jA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.57 46.0 4.14e-01 91.5% 82.6%
4f7kA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 46.0 4.18e-01 91.5% 70.2%
6voxA02 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.56 45.0 4.15e-01 90.2% 85.7%
1x8mA01 2.60.120.520 Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 0.56 50.0 4.41e-01 100.0% 78.7%
1hxdA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 49.0 3.72e-01 100.0% 64.5%
2uxtA03 2.60.40.420 Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins 0.54 43.0 3.83e-01 90.2% 68.3%
1wqwA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 48.0 3.67e-01 100.0% 63.1%
1kzqA01 2.60.40.1320 Mainly Beta › Sandwich › Immunoglobulin-like › SRS domain 0.51 41.0 3.59e-01 91.5% 77.5%
4mboA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.35e-01 91.5% 69.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2581339 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.82 69.0 6.55e-01 100.0% 77.7%
2581338 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.82 69.0 6.48e-01 100.0% 76.0%
2581337 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.80 65.0 6.27e-01 96.3% 76.3%
2581340 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.75 56.0 5.52e-01 95.1% 74.7%
185692 520.2.1.1 ↗ beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich 0.72 55.0 4.99e-01 98.8% 61.5%
4959594 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.70 49.0 5.14e-01 91.5% 80.0%
3195800 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 50.0 3.78e-01 100.0% 37.3%
4942598 3156.1.1.13 ↗ beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cupredoxin_1 0.62 47.0 4.59e-01 90.2% 75.0%
3958103 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.60 42.0 4.54e-01 73.2% 100.0%
3874373 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 48.0 4.14e-01 91.5% 83.0%
3780453 10.32.1.41 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GOLD_2 0.59 47.0 4.12e-01 91.5% 83.0%
3711515 11.1.1.880 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26187 0.57 39.0 3.59e-01 70.7% 73.6%
3523850 10.32.1.226 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_Tenm3 0.55 44.0 3.80e-01 91.5% 72.1%
4025163 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.51 42.0 3.72e-01 93.9% 87.7%
3537044 11.1.1.880 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26187 0.51 36.0 3.44e-01 75.6% 80.0%
3602698 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.51 36.0 3.64e-01 91.5% 72.9%
4969644 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.50 35.0 3.43e-01 90.2% 66.7%
D2 medium residues 1-84
PDB