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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00151
Bact-VirS_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00151
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 42-127
Domain cluster:
rep: CAKLQH020000022.1__CAH1092050.1__SAMEA5780036_02877__00050__D143-214
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01464.26 best | SLT | 68.8 | 4.40e-19 | 88.4% | 70.9% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 84.0 | 6.44e-01 | 91.9% | 55.4% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.93 | 83.0 | 6.52e-01 | 93.0% | 55.7% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.91 | 86.0 | 6.50e-01 | 100.0% | 54.6% |
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.91 | 83.0 | 6.28e-01 | 96.5% | 54.9% |
| 1qsaA03 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.88 | 84.0 | 6.44e-01 | 100.0% | 55.5% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.87 | 82.0 | 6.18e-01 | 100.0% | 48.1% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.85 | 72.0 | 5.70e-01 | 89.5% | 53.4% |
| 7k5cB01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.83 | 69.0 | 5.48e-01 | 87.2% | 53.5% |
| 1hfxA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.79 | 69.0 | 6.11e-01 | 95.3% | 82.1% |
| 1nvmA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.78 | 51.0 | 5.79e-01 | 96.5% | 89.1% |
| 4kt3A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.75 | 69.0 | 5.79e-01 | 100.0% | 75.2% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.75 | 68.0 | 5.81e-01 | 100.0% | 64.6% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.73 | 65.0 | 5.82e-01 | 100.0% | 70.3% |
| 1xsfA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.67 | 54.0 | 5.04e-01 | 87.2% | 80.6% |
| 1xrhD01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.60 | 42.0 | 4.02e-01 | 96.5% | 61.2% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.58 | 44.0 | 3.05e-01 | 100.0% | 23.0% |
| 3hjeA03 | 1.10.150.200 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 | 0.58 | 43.0 | 4.25e-01 | 95.3% | 73.6% |
| 1aorA02 | 1.10.569.10 | Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 | 0.58 | 49.0 | 3.85e-01 | 95.3% | 74.7% |
| 2vixA02 | 1.10.150.630 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.57 | 43.0 | 4.25e-01 | 79.1% | 76.4% |
| 1m3qA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.56 | 32.0 | 3.32e-01 | 75.6% | 58.7% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.56 | 40.0 | 4.16e-01 | 90.7% | 81.0% |
| 1yt3A03 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.55 | 40.0 | 4.14e-01 | 79.1% | 89.0% |
| 2kwpA00 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.54 | 47.0 | 4.12e-01 | 96.5% | 96.9% |
| 2a19A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.54 | 41.0 | 4.18e-01 | 81.4% | 90.6% |
| 3mdmA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 42.0 | 2.75e-01 | 88.4% | 45.1% |
| 1ju2A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 46.0 | 3.16e-01 | 97.7% | 97.3% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.52 | 39.0 | 3.58e-01 | 80.2% | 60.2% |
| 2rrdA00 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 39.0 | 3.76e-01 | 82.6% | 68.3% |
| 2dgzA01 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 38.0 | 3.77e-01 | 82.6% | 76.4% |
| 1yz6A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.51 | 38.0 | 3.84e-01 | 80.2% | 87.4% |
| 6ig5A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.50 | 38.0 | 3.31e-01 | 81.4% | 88.4% |
| 5du9B02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.50 | 35.0 | 2.61e-01 | 70.9% | 60.4% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4258903 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.95 | 91.0 | 7.06e-01 | 100.0% | 60.0% |
| 3166094 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 91.0 | 6.90e-01 | 100.0% | 58.3% |
| 3964630 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 91.0 | 7.05e-01 | 100.0% | 59.1% |
| 4515466 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 90.0 | 6.81e-01 | 100.0% | 56.7% |
| 3944103 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 90.0 | 6.77e-01 | 100.0% | 48.9% |
| 3947473 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.94 | 81.0 | 6.48e-01 | 89.5% | 59.3% |
| 3985073 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.92 | 79.0 | 6.63e-01 | 89.5% | 65.9% |
| 4431057 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.92 | 84.0 | 6.86e-01 | 95.3% | 69.7% |
| 4530587 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.92 | 87.0 | 6.56e-01 | 100.0% | 54.6% |
| 5028353 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.92 | 87.0 | 6.59e-01 | 100.0% | 62.2% |
| 3971115 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.92 | 87.0 | 6.72e-01 | 100.0% | 52.4% |
| 2393514 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.91 | 87.0 | 6.45e-01 | 100.0% | 52.6% |
| 3979308 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.91 | 81.0 | 6.23e-01 | 94.2% | 53.1% |
| 3978377 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.91 | 87.0 | 6.38e-01 | 100.0% | 48.7% |
| 1175858 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.91 | 83.0 | 6.21e-01 | 96.5% | 52.9% |
| 4321901 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.91 | 87.0 | 6.48e-01 | 100.0% | 51.4% |
| 4164050 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.90 | 86.0 | 6.23e-01 | 100.0% | 46.3% |
| 3965879 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.90 | 86.0 | 6.65e-01 | 100.0% | 55.8% |
| 3941811 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.88 | 83.0 | 6.41e-01 | 98.8% | 55.3% |
| 3289359 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.87 | 81.0 | 6.14e-01 | 97.7% | 56.7% |
| 3385979 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.87 | 81.0 | 6.13e-01 | 100.0% | 48.9% |
| 3945171 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.87 | 81.0 | 6.68e-01 | 100.0% | 62.8% |
| 4134825 | 235.1.1.31 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 | 0.87 | 82.0 | 6.10e-01 | 100.0% | 50.8% |
| 3582448 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.86 | 81.0 | 6.87e-01 | 100.0% | 65.4% |
| 3969917 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.86 | 80.0 | 5.93e-01 | 100.0% | 47.0% |
| 3884688 | 235.1.1.31 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › PF31087 | 0.86 | 80.0 | 6.20e-01 | 100.0% | 50.9% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.86 | 77.0 | 7.10e-01 | 94.2% | 82.9% |
| 3970721 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.84 | 77.0 | 6.01e-01 | 100.0% | 64.6% |
| 4455133 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.83 | 72.0 | 7.18e-01 | 97.7% | 89.8% |
| 3692876 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.83 | 79.0 | 5.98e-01 | 100.0% | 68.3% |
| 3720940 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.82 | 77.0 | 5.96e-01 | 100.0% | 60.0% |
| 3205219 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.82 | 78.0 | 6.02e-01 | 100.0% | 62.9% |
| 3839661 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.82 | 76.0 | 5.88e-01 | 98.8% | 53.5% |
| 7426 | 235.1.1.19 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 | 0.79 | 72.0 | 4.84e-01 | 100.0% | 65.1% |
| 4135695 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.78 | 60.0 | 6.24e-01 | 95.3% | 86.4% |
| 3966371 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.77 | 70.0 | 4.73e-01 | 100.0% | 70.7% |
| 1086527 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 69.0 | 5.79e-01 | 100.0% | 75.2% |
| 4680920 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.75 | 68.0 | 5.60e-01 | 100.0% | 81.0% |
| 3285050 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.74 | 68.0 | 5.39e-01 | 100.0% | 73.2% |
| 1406787 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.73 | 65.0 | 5.82e-01 | 100.0% | 70.3% |
| 3728943 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.66 | 62.0 | 4.86e-01 | 100.0% | 55.9% |
| 185214 | 235.1.1.14 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas | 0.66 | 53.0 | 5.30e-01 | 87.2% | 96.6% |
| 3783811 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.56 | 45.0 | 4.57e-01 | 91.9% | 88.2% |
| 3969675 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.56 | 47.0 | 4.27e-01 | 89.5% | 89.1% |
| 4173843 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.55 | 41.0 | 3.84e-01 | 80.2% | 81.8% |
| 3449811 | 101.1.10.38 ↗ | alpha arrays › HTH › HTH › Cyclin-like › DUF247 | 0.54 | 40.0 | 3.59e-01 | 82.6% | 54.8% |
| 5027041 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.54 | 41.0 | 4.15e-01 | 81.4% | 83.5% |
| 1316897 | 532.2.1.1 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › HrpJ | 0.53 | 44.0 | 4.22e-01 | 89.5% | 100.0% |
| 4934097 | 102.3.1.0 ↗ | alpha arrays › HhH/H2TH › eIF2alpha middle domain › eIF2alpha middle domain | 0.53 | 42.0 | 4.23e-01 | 83.7% | 89.4% |
| 4136937 | 102.1.1.2 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HRDC | 0.53 | 38.0 | 3.87e-01 | 80.2% | 78.8% |
| 3948124 | 3227.1.1.1 ↗ | alpha complex topology › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › phosphorylation-coupled saccharide transporter ChbC › PTS_EIIC | 0.51 | 44.0 | 2.84e-01 | 100.0% | 19.3% |
| 3274594 | 101.1.9.30 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N | 0.51 | 37.0 | 2.85e-01 | 90.7% | 33.0% |
| 5042372 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.51 | 34.0 | 3.20e-01 | 98.8% | 56.7% |