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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00192

Bact-Vir

S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00192

Identity

Kingdom:
phage

Quality

73.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 71-143
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02617.23 best ClpS 69.1 3.10e-19 95.9% 78.8%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lzwA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.92 87.0 7.96e-01 100.0% 85.7%
4yjmC00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.92 87.0 8.25e-01 100.0% 94.0%
1ctfA00 3.30.1390.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS 0.84 71.0 7.40e-01 98.6% 98.5%
1w9cA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.71 50.0 3.22e-01 74.0% 29.0%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 58.0 5.52e-01 98.6% 77.6%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.69 56.0 4.39e-01 90.4% 68.8%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.67 49.0 4.36e-01 76.7% 95.1%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.67 49.0 4.40e-01 78.1% 100.0%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 49.0 4.72e-01 83.6% 68.3%
1hk3A03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 47.0 4.35e-01 74.0% 95.7%
1kxpD03 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 45.0 4.30e-01 72.6% 100.0%
1n5uA05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 49.0 4.24e-01 79.5% 99.1%
4mz0B05 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.65 51.0 5.31e-01 100.0% 91.0%
3k17A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 57.0 4.59e-01 98.6% 97.1%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.64 56.0 4.51e-01 100.0% 95.3%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 46.0 3.79e-01 83.6% 41.2%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.63 45.0 4.59e-01 76.7% 91.5%
2kt2A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 5.22e-01 100.0% 98.6%
4at0A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 55.0 3.49e-01 100.0% 57.9%
2m8hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 52.0 4.74e-01 100.0% 77.2%
2cpdA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 51.0 5.10e-01 100.0% 97.3%
2cpxA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 51.0 5.02e-01 100.0% 100.0%
4qu6A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 51.0 4.85e-01 100.0% 87.8%
2oifB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 48.0 3.90e-01 93.2% 89.4%
2lxiA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 49.0 4.70e-01 100.0% 90.1%
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 50.0 5.00e-01 100.0% 96.1%
3nrbB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 50.0 4.87e-01 100.0% 97.6%
4p6qA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 50.0 4.98e-01 100.0% 100.0%
1nrwA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.58 45.0 3.85e-01 89.0% 93.8%
3fz5B00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 44.0 3.41e-01 87.7% 81.1%
3sdeA02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 48.0 4.56e-01 98.6% 89.9%
3iieB03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.55 44.0 4.17e-01 91.8% 72.9%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 45.0 4.16e-01 95.9% 91.8%
3tndA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.52 36.0 3.06e-01 84.9% 40.2%
1xvxA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.20e-01 84.9% 73.1%
3dzaA02 6.10.250.2140 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 38.0 4.09e-01 94.5% 93.5%
8d8lM01 1.10.8.50 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.51 41.0 4.01e-01 91.8% 81.5%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.51 38.0 2.94e-01 82.2% 63.0%
4kp1A01 3.30.499.10 Alpha Beta › 2-Layer Sandwich › Aconitase; domain 3 › Aconitase, domain 3 0.51 41.0 2.86e-01 90.4% 80.1%
4qqwA01 1.10.3210.30 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › 0.50 38.0 2.75e-01 84.9% 68.7%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4320117 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.99 96.0 8.86e-01 100.0% 83.0%
4028279 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.99 96.0 7.94e-01 100.0% 63.5%
4182238 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.99 96.0 8.96e-01 100.0% 85.9%
4441776 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.97 93.0 8.85e-01 100.0% 89.2%
4044190 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.96 91.0 8.14e-01 100.0% 75.8%
3406728 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 91.0 8.37e-01 100.0% 96.7%
4547531 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.95 90.0 8.51e-01 100.0% 85.9%
4660026 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 91.0 8.24e-01 100.0% 83.9%
3740127 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.95 90.0 8.73e-01 100.0% 92.5%
4017933 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.94 90.0 7.76e-01 100.0% 69.5%
3196937 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 90.0 8.26e-01 100.0% 81.1%
3739074 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.94 90.0 8.68e-01 100.0% 92.5%
3791732 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 90.0 7.61e-01 100.0% 77.3%
3503894 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 90.0 8.67e-01 100.0% 98.8%
435725 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 90.0 7.74e-01 100.0% 74.3%
3540525 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 8.64e-01 100.0% 98.8%
4398897 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.94 89.0 7.91e-01 100.0% 79.6%
4595959 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.93 88.0 8.54e-01 100.0% 97.5%
4025747 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.93 88.0 8.53e-01 100.0% 93.8%
3787090 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.92 87.0 7.39e-01 100.0% 66.4%
3838034 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.92 87.0 7.99e-01 100.0% 86.7%
3782919 308.1.1.2 a+b two layers › ClpS-like › ClpS-related › ClpS-related › ClpS 0.90 84.0 7.76e-01 100.0% 81.1%
4643549 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.86 76.0 7.56e-01 98.6% 93.3%
3702846 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.82 71.0 7.25e-01 98.6% 97.1%
3958135 308.1.1.0 a+b two layers › ClpS-like › ClpS-related › ClpS-related 0.81 70.0 6.78e-01 98.6% 85.0%
3389260 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.78 66.0 6.42e-01 95.9% 83.7%
4250530 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.78 67.0 6.54e-01 98.6% 86.1%
3334453 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.77 69.0 6.25e-01 97.3% 95.8%
4027537 308.1.1.1 a+b two layers › ClpS-like › ClpS-related › ClpS-related › Ribosomal_L12 0.76 64.0 6.57e-01 95.9% 95.7%
4646021 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.76 64.0 6.56e-01 100.0% 98.6%
2755152 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.74 64.0 6.47e-01 100.0% 98.6%
5053716 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.73 63.0 6.30e-01 98.6% 100.0%
2485687 4953.2.1.0 beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain 0.68 50.0 4.78e-01 78.1% 96.5%
4159102 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.68 56.0 5.77e-01 98.6% 97.1%
2712025 308.2.1.0 a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.67 57.0 5.70e-01 100.0% 100.0%
4037822 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.67 59.0 3.65e-01 100.0% 40.5%
4128436 304.48.1.39 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.66 60.0 3.88e-01 100.0% 56.5%
3946182 103.2.1.2 alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.66 50.0 4.66e-01 80.8% 95.6%
4935021 4953.1.1.4 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › ASL_C2 0.66 50.0 4.70e-01 82.2% 86.7%
3598952 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.66 49.0 4.01e-01 83.6% 43.8%
3980780 103.2.1.0 alpha arrays › RuvA-C › ATP cone › ATP cone 0.66 49.0 4.64e-01 80.8% 95.6%
3484553 5054.1.1.1 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.66 49.0 3.91e-01 82.2% 40.7%
4126255 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.64 56.0 3.81e-01 98.6% 52.0%
4975992 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 46.0 4.26e-01 78.1% 82.1%
3870903 103.1.1.53 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › TTC3_9th 0.62 43.0 4.74e-01 87.7% 88.3%
4644692 4953.2.1.0 beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain 0.62 49.0 4.70e-01 86.3% 96.5%
4965580 4953.2.1.0 beta barrels › L-aspartase C-terminal domain-like › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain › Lid-like insertion of Propionyl-CoA synthase (PCS) ligase domain 0.62 50.0 4.77e-01 87.7% 95.3%
3689691 101.1.10.61 alpha arrays › HTH › HTH › Cyclin-like › Clr5 0.61 48.0 4.55e-01 83.6% 94.1%
3954904 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.61 54.0 3.48e-01 100.0% 79.7%
3309955 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 45.0 4.12e-01 82.2% 81.0%
4544858 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.60 52.0 3.22e-01 100.0% 37.3%
4396101 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 51.0 3.22e-01 100.0% 40.7%
3599714 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.59 45.0 4.00e-01 84.9% 99.1%
4967639 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.57 44.0 2.93e-01 87.7% 75.5%
3831850 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 43.0 2.75e-01 95.9% 59.0%
4118740 102.2.1.0 alpha arrays › HhH/H2TH › H2TH › H2TH 0.53 43.0 4.30e-01 90.4% 84.0%
3705115 2485.1.1.51 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.53 40.0 2.89e-01 86.3% 56.9%
4970900 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.52 43.0 4.06e-01 91.8% 91.1%
3826289 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 41.0 3.57e-01 84.9% 74.5%
3608405 2485.1.1.51 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 0.51 38.0 2.68e-01 79.5% 32.0%
4947212 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 43.0 3.89e-01 94.5% 80.0%
60261 166.1.1.0 alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.51 36.0 3.36e-01 90.4% 57.9%
5051179 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.51 35.0 2.97e-01 72.6% 42.4%