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S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00249

Bact-Vir

S_p1_S3_coassembly_k141_2031891_prodigal-single.1__X__X__00249

Identity

Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-67
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.74 53.0 4.35e-01 75.8% 56.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.72 55.0 5.25e-01 81.8% 80.3%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.72 51.0 4.37e-01 75.8% 58.7%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.72 51.0 5.73e-01 75.8% 100.0%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 43.0 3.08e-01 74.2% 22.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.69 50.0 4.45e-01 77.3% 62.5%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.69 53.0 4.73e-01 83.3% 97.9%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 48.0 4.28e-01 75.8% 61.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 49.0 4.23e-01 80.3% 54.1%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 45.0 4.04e-01 71.2% 97.9%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 53.0 4.21e-01 100.0% 43.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 56.0 4.36e-01 100.0% 63.1%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.63 54.0 4.37e-01 100.0% 52.6%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.63 46.0 3.68e-01 80.3% 96.5%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 52.0 4.60e-01 100.0% 63.3%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.62 43.0 4.39e-01 74.2% 77.3%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.72e-01 74.2% 78.6%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 53.0 3.85e-01 100.0% 34.6%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 52.0 4.19e-01 100.0% 50.0%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 51.0 4.15e-01 100.0% 48.5%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 38.0 3.04e-01 74.2% 31.2%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 45.0 3.37e-01 83.3% 65.4%
2vpaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 49.0 3.57e-01 100.0% 63.7%
2wliA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.57 50.0 3.79e-01 100.0% 52.8%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 49.0 4.07e-01 100.0% 82.4%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 47.0 3.00e-01 97.0% 84.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 48.0 4.03e-01 100.0% 78.3%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.56 39.0 2.84e-01 75.8% 31.2%
2irmA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 46.0 2.99e-01 97.0% 87.9%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 4.25e-01 98.5% 91.7%
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 42.0 3.89e-01 89.4% 83.7%
1yk9A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 45.0 3.42e-01 100.0% 74.5%
1ttnA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.48e-01 98.5% 91.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 46.0 4.20e-01 100.0% 94.6%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 44.0 4.09e-01 98.5% 87.8%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 4.06e-01 90.9% 92.4%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 45.0 4.11e-01 100.0% 92.6%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.52 41.0 3.43e-01 100.0% 45.9%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.52 43.0 3.73e-01 98.5% 59.3%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 42.0 3.35e-01 100.0% 93.4%
2dafA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 44.0 4.23e-01 97.0% 90.8%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.51 44.0 4.21e-01 98.5% 85.7%
2i0kA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 42.0 3.53e-01 97.0% 87.3%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 42.0 3.43e-01 100.0% 77.7%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 43.0 4.16e-01 98.5% 92.2%
3vqiD03 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 43.0 4.19e-01 98.5% 93.3%
3t7aA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 40.0 2.86e-01 87.9% 94.6%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 43.0 3.48e-01 100.0% 50.7%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.87 61.0 6.42e-01 72.7% 98.3%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.86 59.0 6.29e-01 71.2% 98.3%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.85 61.0 6.89e-01 77.3% 98.0%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.85 58.0 6.36e-01 71.2% 100.0%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.85 58.0 6.20e-01 71.2% 98.3%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.84 61.0 6.41e-01 75.8% 98.3%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.82 58.0 6.61e-01 75.8% 98.0%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 63.0 6.16e-01 83.3% 87.1%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.79 62.0 6.30e-01 83.3% 95.3%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 63.0 5.27e-01 84.8% 59.0%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.77 51.0 5.98e-01 72.7% 100.0%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.77 50.0 5.86e-01 71.2% 97.8%
3517068 3115.1.1.6 a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 0.77 59.0 6.02e-01 81.8% 100.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 60.0 5.78e-01 83.3% 81.3%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.76 51.0 5.69e-01 74.2% 92.0%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.75 50.0 5.75e-01 72.7% 100.0%
3943126 3115.4.1.0 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 0.75 59.0 5.96e-01 83.3% 96.9%
3396683 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.70 54.0 5.08e-01 97.0% 69.6%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.68 51.0 5.30e-01 100.0% 88.3%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 48.0 5.25e-01 74.2% 100.0%
3466254 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 45.0 5.04e-01 97.0% 94.0%
4962335 3115.5.1.1 a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB 0.65 52.0 5.25e-01 89.4% 87.7%
4394754 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.64 48.0 4.32e-01 80.3% 83.3%
3393809 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.63 53.0 3.80e-01 95.5% 96.6%
3442112 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 45.0 4.79e-01 100.0% 90.9%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.63 48.0 4.69e-01 100.0% 74.7%
3653569 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.62 44.0 4.72e-01 100.0% 90.9%
5045395 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.62 54.0 4.63e-01 100.0% 94.5%
5050292 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 46.0 3.75e-01 100.0% 41.5%
3983718 304.48.1.14 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.59 49.0 4.23e-01 100.0% 100.0%
3187872 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.57 43.0 3.91e-01 83.3% 81.9%
3379810 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 41.0 4.28e-01 100.0% 90.0%
2324048 1185.1.1.1 a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 0.56 46.0 3.66e-01 100.0% 44.2%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.56 47.0 3.84e-01 100.0% 49.2%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.55 42.0 4.07e-01 84.8% 100.0%
3200703 304.3.1.1 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.55 49.0 4.49e-01 100.0% 94.1%
4680590 2.21.1.4 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) › SSO2105_N 0.54 39.0 2.89e-01 78.8% 35.9%
3210219 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 3.96e-01 100.0% 82.7%
3711708 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 45.0 4.25e-01 98.5% 82.4%
4951717 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.54 46.0 4.48e-01 95.5% 100.0%
3287985 10.12.1.40 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC_2 0.53 47.0 3.11e-01 100.0% 23.2%
4377632 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.53 45.0 3.69e-01 100.0% 86.7%
3766042 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.53 45.0 3.87e-01 98.5% 72.7%
4973377 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.53 39.0 2.95e-01 80.3% 35.9%
3989046 862.1.1.8 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE 0.52 40.0 2.79e-01 83.3% 51.6%
185509 10.26.1.2 beta sandwiches › jelly-roll › Histone H3 binding protein ORF158L › Histone H3 binding protein ORF158L › ORF158L-like 0.52 41.0 3.43e-01 100.0% 45.9%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 43.0 3.75e-01 97.0% 62.7%
3394851 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.52 45.0 4.18e-01 98.5% 76.5%
4146813 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.52 44.0 4.04e-01 98.5% 87.8%
3741078 221.1.1.44 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Rad60-SLD 0.51 44.0 4.23e-01 98.5% 93.3%
3783481 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.51 44.0 3.69e-01 100.0% 66.7%
4002291 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 38.0 3.71e-01 100.0% 73.3%
4974741 304.125.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in Api92-like proteins › ferredoxin-like domain in Api92-like proteins 0.51 42.0 4.00e-01 100.0% 92.9%
3412495 220.1.1.85 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID_2 0.51 37.0 2.90e-01 80.3% 52.7%
3167864 221.1.1.2 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.51 43.0 4.22e-01 98.5% 88.0%
3612583 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 42.0 4.17e-01 100.0% 88.6%
3737433 206.1.3.21 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.50 40.0 2.71e-01 87.9% 83.9%