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Serine_protease
Euk-VirPandoravirus_dulcis
Serine_protease__YP_009430199__Pandoravirus_dulcis__1349409
Identity
- Accession:
- YP_009430199 ↗
- Protein ID:
- Serine_protease
- Kingdom:
- euk
Quality
51.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 644-780
Domain cluster:
rep: Serine_protease,_DegP_HtrA,_do-like__YP_009352826__Kaumoebavirus_Viruses.__X__D302-418
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4flnA02 | 3.20.190.20 | Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › | 0.82 | 73.0 | 7.00e-01 | 92.0% | 83.6% |
| 2hgaA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.77 | 43.0 | 5.38e-01 | 73.0% | 88.2% |
| 4jj0B00 | 2.30.42.60 | Mainly Beta › Roll › Pdz3 Domain › | 0.77 | 55.0 | 5.00e-01 | 92.0% | 56.1% |
| 1ky9B03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.77 | 50.0 | 5.97e-01 | 78.8% | 96.8% |
| 4yo1A03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.76 | 51.0 | 6.09e-01 | 80.3% | 100.0% |
| 3pv2A03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.74 | 46.0 | 5.71e-01 | 75.9% | 97.7% |
| 6ieoA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.72 | 48.0 | 5.65e-01 | 97.1% | 96.8% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.72 | 45.0 | 5.37e-01 | 85.4% | 91.5% |
| 7co7D03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.72 | 48.0 | 5.69e-01 | 78.8% | 98.9% |
| 5t69A02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.71 | 51.0 | 5.70e-01 | 81.8% | 95.3% |
| 3qo6A03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.68 | 49.0 | 5.58e-01 | 81.8% | 99.0% |
| 2i6vA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.67 | 41.0 | 5.06e-01 | 76.6% | 97.7% |
| 1te0A03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.67 | 46.0 | 5.31e-01 | 89.1% | 97.0% |
| 2kjpA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.65 | 38.0 | 4.85e-01 | 89.1% | 100.0% |
| 2l97A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.64 | 45.0 | 5.15e-01 | 94.9% | 99.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 24.0 | 3.81e-01 | 91.2% | 98.0% |
| 2r6fA03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.60 | 32.0 | 4.20e-01 | 78.1% | 97.2% |
| 3fdjA03 | 3.30.1180.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › | 0.59 | 41.0 | 4.22e-01 | 97.1% | 75.8% |
| 4v0bA00 | 3.30.720.210 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 23.0 | 3.14e-01 | 91.2% | 74.6% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.51 | 32.0 | 3.79e-01 | 85.4% | 89.7% |
| 2d9xA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 32.0 | 3.49e-01 | 94.9% | 77.3% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 32.0 | 3.81e-01 | 94.2% | 97.7% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3808127 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.85 | 72.0 | 7.30e-01 | 92.0% | 88.9% |
| 3803377 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.84 | 68.0 | 7.02e-01 | 92.0% | 88.5% |
| 4028484 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.82 | 72.0 | 7.10e-01 | 92.0% | 88.3% |
| 3373766 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.82 | 73.0 | 7.04e-01 | 92.7% | 85.3% |
| 3645831 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.81 | 71.0 | 6.81e-01 | 92.0% | 87.7% |
| 3964829 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.80 | 49.0 | 6.18e-01 | 78.8% | 100.0% |
| 3249313 | 7.1.1.7 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_3 | 0.80 | 70.0 | 6.80e-01 | 92.0% | 84.7% |
| 4986873 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.78 | 43.0 | 5.16e-01 | 73.0% | 78.9% |
| 5065808 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.78 | 41.0 | 5.30e-01 | 73.7% | 88.7% |
| 4954125 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.78 | 44.0 | 5.40e-01 | 73.7% | 85.6% |
| 5055613 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.78 | 45.0 | 5.32e-01 | 74.5% | 82.1% |
| 3710124 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.77 | 48.0 | 5.86e-01 | 92.7% | 95.6% |
| 3744611 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.77 | 58.0 | 6.06e-01 | 92.0% | 84.8% |
| 753 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.77 | 43.0 | 4.94e-01 | 73.7% | 73.8% |
| 3596413 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.76 | 48.0 | 5.80e-01 | 94.9% | 95.6% |
| 5000812 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.76 | 44.0 | 5.35e-01 | 72.3% | 86.7% |
| 5037078 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.76 | 43.0 | 5.11e-01 | 75.9% | 81.1% |
| 5083368 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.75 | 46.0 | 5.19e-01 | 78.8% | 79.0% |
| 5054027 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.75 | 40.0 | 5.15e-01 | 73.0% | 88.7% |
| 4938084 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.75 | 42.0 | 5.03e-01 | 75.9% | 80.0% |
| 4237621 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.75 | 51.0 | 5.94e-01 | 75.9% | 96.0% |
| 4984141 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.74 | 46.0 | 5.29e-01 | 76.6% | 84.0% |
| 4955256 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.74 | 50.0 | 5.87e-01 | 78.8% | 97.9% |
| 4979603 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.74 | 44.0 | 5.00e-01 | 76.6% | 77.1% |
| 4931081 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.74 | 44.0 | 4.68e-01 | 85.4% | 65.6% |
| 5036365 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.74 | 40.0 | 4.84e-01 | 75.9% | 80.0% |
| 4967626 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.74 | 45.0 | 5.21e-01 | 87.6% | 83.0% |
| 3588917 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.73 | 53.0 | 6.03e-01 | 82.5% | 98.1% |
| 4935017 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.73 | 43.0 | 4.49e-01 | 73.7% | 63.2% |
| 5000198 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.73 | 50.0 | 5.87e-01 | 81.8% | 100.0% |
| 5033889 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.72 | 50.0 | 5.72e-01 | 82.5% | 96.0% |
| 3947793 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.72 | 45.0 | 5.30e-01 | 87.6% | 89.5% |
| 3977037 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.72 | 45.0 | 4.96e-01 | 70.1% | 77.3% |
| 4197655 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.72 | 45.0 | 4.86e-01 | 70.8% | 72.5% |
| 5048194 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.72 | 44.0 | 5.03e-01 | 87.6% | 83.0% |
| 3945198 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.72 | 47.0 | 5.55e-01 | 78.1% | 95.8% |
| 4351213 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.72 | 47.0 | 5.51e-01 | 75.9% | 94.7% |
| 4933420 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.72 | 48.0 | 5.68e-01 | 81.0% | 98.9% |
| 3386905 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.71 | 50.0 | 5.66e-01 | 85.4% | 94.3% |
| 4199561 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.71 | 50.0 | 5.47e-01 | 88.3% | 85.2% |
| 4956620 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.71 | 46.0 | 5.06e-01 | 75.9% | 80.0% |
| 4995880 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.71 | 44.0 | 4.87e-01 | 89.1% | 76.4% |
| 4949343 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.71 | 47.0 | 4.81e-01 | 87.6% | 69.2% |
| 4479893 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.71 | 45.0 | 4.95e-01 | 87.6% | 78.2% |
| 4007876 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.71 | 45.0 | 5.15e-01 | 78.1% | 86.0% |
| 3964843 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.71 | 45.0 | 5.26e-01 | 87.6% | 90.5% |
| 5075948 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.71 | 44.0 | 4.87e-01 | 89.8% | 77.3% |
| 4957227 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.70 | 42.0 | 5.11e-01 | 77.4% | 91.1% |
| 4182137 | 7.1.1.5 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 | 0.70 | 51.0 | 5.66e-01 | 82.5% | 94.5% |
| 3816592 | 7.1.1.12 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_1 | 0.69 | 58.0 | 6.01e-01 | 96.4% | 93.1% |
| 3306780 | 7.1.1.12 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_1 | 0.68 | 57.0 | 5.97e-01 | 94.9% | 96.8% |
| 4584785 | 7.1.1.12 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_1 | 0.66 | 59.0 | 5.98e-01 | 98.5% | 95.6% |
| 4479761 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.65 | 43.0 | 4.89e-01 | 81.0% | 90.0% |
| 5043341 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.65 | 43.0 | 5.01e-01 | 70.8% | 92.0% |
| 4977083 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.63 | 48.0 | 4.91e-01 | 88.3% | 80.0% |
| 4007430 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.62 | 40.0 | 4.80e-01 | 81.0% | 98.9% |
| 4026595 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.53 | 33.0 | 4.02e-01 | 85.4% | 96.6% |
| 3392529 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.53 | 33.0 | 4.00e-01 | 86.1% | 95.6% |
| 3403184 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.53 | 34.0 | 3.92e-01 | 86.9% | 89.0% |
| 3694693 | 4.8.1.2 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow | 0.51 | 22.0 | 2.99e-01 | 92.7% | 76.9% |
| 3645592 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.51 | 32.0 | 3.73e-01 | 91.2% | 87.0% |
D2
medium
residues 122-236
Domain cluster:
rep: LC208019__BBC20930.1__X__00004__D36-118
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.92 | 63.0 | 7.03e-01 | 99.1% | 87.0% |
| 3otpA01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.91 | 64.0 | 5.12e-01 | 100.0% | 40.9% |
| 3stjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.90 | 59.0 | 6.85e-01 | 87.8% | 89.4% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.90 | 63.0 | 7.13e-01 | 99.1% | 92.1% |
| 5y2dA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.85 | 58.0 | 5.77e-01 | 100.0% | 67.5% |
| 2z9iC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.83 | 60.0 | 6.72e-01 | 98.3% | 92.4% |
| 3nziA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.82 | 61.0 | 6.43e-01 | 99.1% | 84.0% |
| 4rqyA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.81 | 61.0 | 6.02e-01 | 100.0% | 73.2% |
| 5hmaA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.81 | 58.0 | 6.68e-01 | 99.1% | 97.7% |
| 4ri0A01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.79 | 60.0 | 4.91e-01 | 100.0% | 45.5% |
| 4ic6C01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.76 | 61.0 | 6.29e-01 | 99.1% | 87.3% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 60.0 | 4.70e-01 | 95.7% | 46.1% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.70 | 54.0 | 5.71e-01 | 95.7% | 88.5% |
| 1eq9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 54.0 | 5.65e-01 | 97.4% | 88.6% |
| 1l1jA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 61.0 | 6.11e-01 | 99.1% | 91.5% |
| 5eokA05 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.68 | 58.0 | 4.49e-01 | 100.0% | 44.8% |
| 3dfjA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 54.0 | 5.46e-01 | 95.7% | 85.0% |
| 1qa7A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 53.0 | 5.43e-01 | 100.0% | 86.4% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 49.0 | 5.56e-01 | 96.5% | 100.0% |
| 4rt0A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.66 | 55.0 | 5.62e-01 | 98.3% | 92.7% |
| 2xzlA02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 41.0 | 4.76e-01 | 74.8% | 89.9% |
| 5f8zA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 53.0 | 5.46e-01 | 97.4% | 88.4% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 55.0 | 5.50e-01 | 95.7% | 89.8% |
| 5lhrA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 55.0 | 5.50e-01 | 97.4% | 90.6% |
| 1dleA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 59.0 | 5.65e-01 | 100.0% | 91.5% |
| 6k2lA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 45.0 | 4.65e-01 | 77.4% | 90.1% |
| 1fiwA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 53.0 | 5.30e-01 | 95.7% | 89.2% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.59 | 43.0 | 3.99e-01 | 74.8% | 63.4% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.58 | 48.0 | 4.85e-01 | 87.8% | 94.6% |
| 1autC01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 48.0 | 4.63e-01 | 93.0% | 82.8% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 50.0 | 4.86e-01 | 100.0% | 90.4% |
| 2vs7A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 34.0 | 3.95e-01 | 98.3% | 96.2% |
| 2ksvA00 | 3.10.620.30 | Alpha Beta › Roll › C8orf32 fold › | 0.52 | 36.0 | 3.05e-01 | 70.4% | 80.0% |
| 4liqE05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 36.0 | 3.84e-01 | 73.0% | 100.0% |
| 4gaaA01 | 2.60.40.1730 | Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain | 0.51 | 43.0 | 3.70e-01 | 94.8% | 93.3% |
| 1mkfA02 | 2.60.40.1340 | Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like | 0.50 | 36.0 | 3.14e-01 | 73.0% | 52.9% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957702 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.92 | 66.0 | 6.21e-01 | 100.0% | 63.0% |
| 3280955 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.89 | 65.0 | 5.07e-01 | 100.0% | 38.7% |
| 3284072 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.88 | 64.0 | 4.89e-01 | 100.0% | 36.0% |
| 4939745 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.86 | 68.0 | 5.34e-01 | 100.0% | 42.7% |
| 4028467 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.86 | 70.0 | 5.13e-01 | 100.0% | 35.6% |
| 3464880 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.84 | 62.0 | 4.89e-01 | 100.0% | 40.5% |
| 3650249 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.84 | 71.0 | 5.35e-01 | 100.0% | 41.2% |
| 1308507 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.83 | 59.0 | 4.93e-01 | 100.0% | 44.9% |
| 3532116 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.83 | 63.0 | 4.97e-01 | 100.0% | 41.9% |
| 4169622 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.82 | 63.0 | 4.91e-01 | 100.0% | 40.9% |
| 4119987 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.82 | 65.0 | 5.09e-01 | 100.0% | 42.2% |
| 398505 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.81 | 63.0 | 4.88e-01 | 100.0% | 40.4% |
| 3190386 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.81 | 64.0 | 4.96e-01 | 100.0% | 40.4% |
| 3611892 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.81 | 57.0 | 4.70e-01 | 100.0% | 43.7% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.81 | 59.0 | 4.67e-01 | 100.0% | 41.0% |
| 3454710 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.80 | 61.0 | 4.77e-01 | 100.0% | 40.9% |
| 3435448 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.79 | 63.0 | 4.83e-01 | 100.0% | 39.9% |
| 3443528 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.79 | 63.0 | 4.96e-01 | 100.0% | 44.2% |
| 3429729 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.78 | 63.0 | 5.15e-01 | 100.0% | 48.7% |
| 4600945 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.77 | 61.0 | 4.78e-01 | 100.0% | 42.7% |
| 3434538 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.76 | 62.0 | 4.95e-01 | 100.0% | 45.6% |
| 3843527 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.76 | 62.0 | 4.80e-01 | 100.0% | 42.7% |
| 3436414 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.76 | 61.0 | 4.89e-01 | 100.0% | 45.7% |
| 3420143 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.76 | 61.0 | 5.38e-01 | 100.0% | 60.0% |
| 3682203 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.76 | 69.0 | 5.59e-01 | 100.0% | 54.1% |
| 3420315 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.75 | 60.0 | 4.88e-01 | 100.0% | 48.0% |
| 4015954 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 64.0 | 4.96e-01 | 100.0% | 44.3% |
| 4089092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.75 | 65.0 | 5.04e-01 | 100.0% | 45.1% |
| 3462061 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.74 | 62.0 | 4.91e-01 | 100.0% | 46.5% |
| 3447254 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.73 | 63.0 | 4.94e-01 | 100.0% | 46.8% |
| 3417330 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.73 | 60.0 | 4.75e-01 | 100.0% | 45.6% |
| 4441614 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.73 | 70.0 | 5.20e-01 | 100.0% | 51.0% |
| 3997886 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.73 | 63.0 | 4.92e-01 | 100.0% | 46.6% |
| 3464866 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.71 | 61.0 | 5.51e-01 | 100.0% | 69.3% |
| 3597372 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.71 | 65.0 | 4.83e-01 | 100.0% | 53.3% |
| 3731870 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.70 | 66.0 | 4.61e-01 | 100.0% | 43.3% |
| 4352127 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.70 | 64.0 | 4.82e-01 | 100.0% | 43.9% |
| 5057020 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.67 | 58.0 | 5.61e-01 | 100.0% | 84.8% |
| 3966602 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.66 | 50.0 | 5.01e-01 | 97.4% | 77.5% |
| 5016520 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.66 | 55.0 | 4.35e-01 | 90.4% | 45.5% |
| 3735427 | 11.1.1.545 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Chromosome_seg | 0.64 | 52.0 | 4.62e-01 | 88.7% | 83.3% |
| 3198883 | 1.1.5.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 | 0.64 | 56.0 | 4.55e-01 | 97.4% | 90.9% |
| 3538666 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 53.0 | 4.20e-01 | 93.9% | 45.8% |
| 3405662 | 11.1.1.822 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 | 0.61 | 35.0 | 3.93e-01 | 73.0% | 71.1% |
| 3490463 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.59 | 48.0 | 3.84e-01 | 93.9% | 42.8% |
| 119252 | 1.1.13.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join | 0.58 | 48.0 | 4.85e-01 | 87.8% | 94.6% |
| 4013242 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 41.0 | 4.11e-01 | 88.7% | 73.0% |
| 3487745 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 43.0 | 3.60e-01 | 78.3% | 54.0% |
| 3415837 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 4.18e-01 | 71.3% | 95.0% |
| 78 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.56 | 50.0 | 4.86e-01 | 100.0% | 90.4% |
| 3186680 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.50 | 43.0 | 3.76e-01 | 93.0% | 96.6% |
D3
medium
residues 237-327
Domain cluster:
rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00089.33 best | Trypsin | 26.8 | 6.20e-06 | 97.8% | 45.9% |
| PF13365.13 | Trypsin_2 | 33.1 | 1.30e-07 | 70.3% | 49.0% |
D4
medium
residues 493-532_581-613