Sigma_NS

Euk-Vir

Mahlapitsi_orthoreovirus

Sigma_NS__YP_009246470__Mahlapitsi_orthoreovirus__2170064

Identity

87.3 mean pLDDT

View cluster (11 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 179-246_283-370

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	70.3	1.80e-19	59.0%	23.8%
PF01518.22	PolyG_pol	54.4	1.20e-14	44.9%	18.0%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1q7hA01	3.10.450.120	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1	0.61	23.0	3.50e-01	90.4%	80.0%
2i8dA01	3.90.1150.200	Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 ›	0.56	22.0	3.06e-01	97.4%	69.1%
5tw4A02	2.30.140.20	Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain	0.54	23.0	3.26e-01	97.4%	85.5%
5ejrA03	2.30.29.30	Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	0.52	24.0	3.24e-01	85.3%	83.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2841859	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	28.0	3.80e-01	97.4%	93.2%
3951704	103.12.1.0 ↗	alpha arrays › RuvA-C › ANTAR domain › ANTAR domain	0.57	27.0	3.86e-01	98.1%	98.6%
3386669	11.36.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain	0.57	24.0	3.39e-01	89.1%	78.8%
3949940	319.1.1.4 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20	0.56	22.0	2.90e-01	98.7%	62.4%
3511968	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.53	21.0	2.96e-01	86.5%	74.3%
1447939	11.36.1.2 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Csd4 Ig-like domain › Csd4 Ig-like domain › Peptidase_M99_m	0.53	23.0	3.31e-01	88.5%	86.5%

D2 medium residues 22-178_247-282

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01518.22 best	PolyG_pol	87.2	1.30e-24	82.9%	42.1%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1st6A02	1.20.120.810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle	0.60	37.0	3.43e-01	99.0%	48.3%
1g4uS01	1.20.120.260	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain	0.60	38.0	4.56e-01	97.4%	95.3%
4yjwA00	1.20.120.930	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829	0.57	39.0	4.32e-01	99.5%	85.6%
5wp3B00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.54	25.0	3.38e-01	98.4%	81.4%
2q00B00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.50	32.0	3.88e-01	83.4%	100.0%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3906123	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.61	24.0	3.14e-01	98.4%	61.7%
3956763	605.1.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase	0.57	27.0	3.69e-01	97.9%	85.0%
4480624	601.50.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › Flagellar cap protein FliD helical bundle domain › Flagellar cap protein FliD helical bundle domain	0.53	38.0	4.33e-01	96.9%	100.0%
3479389	601.1.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin	0.52	36.0	3.71e-01	97.9%	73.5%