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TGB_3_protein

Euk-Vir

Euonymus_yellow_vein_virus

TGB_3_protein__YP_009389422__Euonymus_yellow_vein_virus__2013968

Identity

Accession:
YP_009389422 ↗
Protein ID:
TGB_3_protein
Kingdom:
euk

Quality

63.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Tymovirales› Alphaflexiviridae› Potexvirus› Euonymus_yellow_vein_virus

TaxID: 2013968

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-56
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02495.23 best TGBp3 41.9 8.90e-11 100.0% 86.4%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 49.0 3.89e-01 77.4% 81.1%
3mk7C01 6.10.280.130 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 44.0 3.57e-01 88.7% 39.4%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 49.0 3.91e-01 81.1% 46.6%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.64 47.0 3.67e-01 77.4% 53.2%
4zudA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 45.0 2.85e-01 79.2% 20.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 2.89e-01 71.7% 70.1%
4uyiA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.57 51.0 3.77e-01 98.1% 55.9%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.50e-01 88.7% 73.2%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 40.0 2.63e-01 75.5% 35.5%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.56 42.0 2.60e-01 84.9% 74.9%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.55 30.0 2.34e-01 77.4% 23.3%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.54 38.0 2.96e-01 77.4% 37.1%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.54 41.0 2.45e-01 83.0% 53.4%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.39e-01 83.0% 81.9%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.53 37.0 2.32e-01 75.5% 23.4%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.19e-01 90.6% 67.4%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.52 36.0 2.89e-01 73.6% 59.2%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 39.0 2.58e-01 84.9% 23.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3304324 101.1.2.106 ↗ alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37 0.74 42.0 3.04e-01 75.5% 22.2%
3628456 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.72 52.0 3.93e-01 77.4% 68.8%
3228583 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.70 51.0 4.01e-01 79.2% 67.8%
3579472 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.68 50.0 3.66e-01 77.4% 77.7%
3466238 206.1.1.14 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.67 46.0 2.69e-01 73.6% 8.4%
4017372 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 47.0 3.68e-01 77.4% 87.8%
3582184 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 48.0 3.18e-01 81.1% 48.0%
60305 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.64 47.0 3.71e-01 77.4% 54.7%
5058284 2004.1.1.14 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU 0.64 31.0 2.07e-01 73.6% 11.9%
4978597 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.63 46.0 3.15e-01 79.2% 25.4%
5024801 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 3.99e-01 90.6% 95.7%
5035263 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.62 31.0 2.43e-01 75.5% 25.7%
3320244 53.1.1.4 ↗ beta duplicates or obligate multimers › Triple beta-spiral › Triple beta-spiral › Triple beta-spiral › XH 0.61 43.0 3.57e-01 75.5% 71.4%
None — 0.61 43.0 2.65e-01 75.5% 16.5%
3991594 601.42.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain 0.59 48.0 3.41e-01 94.3% 67.6%
3614763 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 46.0 3.49e-01 84.9% 40.0%
3550136 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 47.0 3.65e-01 100.0% 40.9%
5009814 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 34.0 2.55e-01 84.9% 22.2%
3511708 859.1.1.1 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.57 39.0 2.55e-01 71.7% 20.5%
4670438 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.56 39.0 3.80e-01 73.6% 78.0%
5082299 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.47e-01 98.1% 45.3%
3957133 7581.1.1.22 ↗ a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt 0.56 39.0 2.59e-01 73.6% 24.8%
3743600 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.55 43.0 2.42e-01 86.8% 54.3%
3330811 101.1.1.339 ↗ alpha arrays › HTH › HTH › Three-helical HTH › XH 0.55 42.0 3.43e-01 83.0% 77.0%
3962316 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.54 33.0 2.63e-01 71.7% 26.7%
5061423 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.53 44.0 2.73e-01 96.2% 58.6%
3712081 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.52 47.0 3.65e-01 98.1% 50.9%
3593339 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.52 47.0 3.59e-01 98.1% 48.7%
4012962 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 2.68e-01 92.5% 43.6%