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TK3

Euk-Vir

Tipula_oleracea_nudivirus

TK3__YP_009116661__Tipula_oleracea_nudivirus__1546257

Identity

Accession:: YP_009116661 ↗
Protein ID:: TK3
Kingdom:: euk

Quality

59.4 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Deltanudivirus› Tipula_oleracea_nudivirus

TaxID: 1546257

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 149-230_323-374

PDB

Domain cluster: rep: orf85_gene_product__YP_004956833__Helicoverpa_zea_nudivirus_2__1128424__D218-322_423-443

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2yogA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.74	59.0	5.16e-01	84.3%	92.4%
3nwjA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	54.0	4.71e-01	82.8%	89.7%
7l4aA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.67	53.0	4.51e-01	83.6%	98.2%
2bdtA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	52.0	4.79e-01	82.8%	96.5%
1e6cA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.64	49.0	4.48e-01	79.1%	97.1%
2vliB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.64	49.0	4.49e-01	80.6%	95.4%
2xb4A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	47.0	3.97e-01	78.4%	98.7%
3d3qA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	48.0	4.58e-01	83.6%	97.4%
2l82A00	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.56	44.0	4.14e-01	83.6%	94.4%
4zm6A01	3.20.20.300	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain	0.55	46.0	3.43e-01	91.0%	96.4%
3t54A01	3.40.50.11950	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.55	42.0	4.48e-01	87.3%	93.1%
2jfvA01	3.40.50.1860	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.51	44.0	4.24e-01	96.3%	93.6%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5036660	7515.1.1.6 ↗	a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest	0.67	51.0	3.59e-01	79.1%	92.1%
3320457	2004.1.1.65 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › 6PF2K	0.62	48.0	3.82e-01	79.9%	75.3%
4162604	7589.1.1.2 ↗	a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C	0.55	43.0	3.92e-01	82.1%	94.4%
4176593	7589.1.1.2 ↗	a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C	0.54	42.0	3.75e-01	82.8%	97.9%
5023896	2002.1.1.77 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RNase_P_p30	0.53	40.0	3.36e-01	79.1%	97.9%
4972373	7589.1.1.1 ↗	a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › SBD_N	0.50	40.0	3.30e-01	85.1%	99.2%
4989913	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.50	37.0	2.98e-01	76.9%	90.6%
3963341	5051.1.1.1 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF	0.50	44.0	3.03e-01	98.5%	92.5%

D2 medium residues 231-322

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2plrA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	55.0	4.21e-01	87.0%	41.5%
1t3lA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	47.0	3.67e-01	77.2%	62.1%
3czqC00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.57	48.0	3.50e-01	96.7%	84.9%
7ezyA01	1.10.3100.10	Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein	0.54	45.0	4.20e-01	94.6%	83.5%
2vxoA02	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	37.0	2.87e-01	78.3%	70.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3480184	2004.1.1.197 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3	0.77	56.0	4.30e-01	76.1%	36.5%
4933472	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.66	60.0	4.46e-01	100.0%	40.4%
4946728	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.63	57.0	4.35e-01	100.0%	59.0%
2988294	2004.1.1.50 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin	0.63	46.0	3.51e-01	77.2%	53.3%
5079433	2003.1.5.66 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11	0.52	36.0	2.91e-01	70.7%	97.3%