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TM-glycoprotein

Euk-Vir

Ball_python_nidovirus_1

TM-glycoprotein__YP_009052478__Ball_python_nidovirus_1__1986118

Identity

Accession:: YP_009052478 ↗
Protein ID:: TM-glycoprotein
Kingdom:: euk

Quality

54.7 mean pLDDT

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 88-189

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2b8mA00	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.62	34.0	3.39e-01	100.0%	49.5%
4ohvA01	2.60.120.1030	Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain	0.60	39.0	4.35e-01	100.0%	85.0%
4oi4C01	2.60.120.1030	Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain	0.57	39.0	4.18e-01	100.0%	84.5%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3631904	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.67	37.0	3.84e-01	83.3%	57.9%
3631345	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.64	37.0	3.43e-01	83.3%	45.6%
5037790	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.63	38.0	4.47e-01	100.0%	88.6%
4970994	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.63	40.0	4.50e-01	100.0%	86.7%
4999938	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.62	39.0	4.47e-01	100.0%	86.7%
4990331	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.61	37.0	4.30e-01	97.1%	88.6%
1296378	10.34.1.1 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N	0.60	39.0	4.35e-01	100.0%	85.0%
3949350	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.60	35.0	4.17e-01	91.2%	89.2%
5000606	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.60	38.0	4.28e-01	100.0%	86.7%
5071462	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.60	38.0	4.28e-01	100.0%	86.7%
3703198	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.59	36.0	4.10e-01	99.0%	87.1%
3704150	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.58	34.0	3.49e-01	91.2%	60.0%
3609153	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.57	35.0	3.48e-01	91.2%	57.7%
3486188	10.34.1.0 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain	0.57	35.0	4.04e-01	99.0%	90.0%
4058249	10.34.1.1 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N	0.56	35.0	4.06e-01	98.0%	91.4%
1180072	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.56	35.0	3.54e-01	77.5%	61.3%
3514819	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.55	41.0	3.03e-01	80.4%	74.3%
4053990	10.34.1.1 ↗	beta sandwiches › jelly-roll › Protein CLP1 jelly-roll domain › Protein CLP1 jelly-roll domain › CLP1_N	0.55	42.0	4.30e-01	100.0%	85.0%
4141296	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.54	35.0	3.99e-01	75.5%	90.7%